mlsanityData to 7 Oct 2026

Sample-Efficient Optimization in the Latent Space of Deep Generative Models via Weighted Retraining

arXiv 2006.09191 ↗First posted 16 Jun 2020cs.LG stat.MLcited by 121

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Abstract (arXiv)

Many important problems in science and engineering, such as drug design, involve optimizing an expensive black-box objective function over a complex, high-dimensional, and structured input space. Although machine learning techniques have shown promise in solving such problems, existing approaches substantially lack sample efficiency. We introduce an improved method for efficient black-box optimization, which performs the optimization in the low-dimensional, continuous latent manifold learned by a deep generative model. In contrast to previous approaches, we actively steer the generative model to maintain a latent manifold that is highly useful for efficiently optimizing the objective. We achieve this by periodically retraining the generative model on the data points queried along the optimization trajectory, as well as weighting those data points according to their objective function value. This weighted retraining can be easily implemented on top of existing methods, and is empirically shown to significantly improve their efficiency and performance on synthetic and real-world optimization problems.

Key facts. Cited by 121 papers in the map (data through 7 Oct 2026). First posted on arXiv 16 Jun 2020.

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Citing papers per year: 2021: 13; 2022: 20; 2023: 24; 2024: 26; 2025: 24; 2026: 14.

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  1. 2022Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoderscited by 99
  2. 2022Local Latent Space Bayesian Optimization over Structured Inputscited by 78
  3. 2021High-Dimensional Bayesian Optimisation with Variational Autoencoders and Deep Metric Learningcited by 54
  4. 2021Improving black-box optimization in VAE latent space using decoder uncertaintycited by 51
  5. 2022Pareto Set Learning for Expensive Multi-Objective Optimizationcited by 51
  6. 2023Increasing the Scope as You Learn: Adaptive Bayesian Optimization in Nested Subspacescited by 50
  7. 2023LightTS: Lightweight Time Series Classification with Adaptive Ensemble Distillation -- Extended Versioncited by 49
  8. 2023Sample-efficient Multi-objective Molecular Optimization with GFlowNetscited by 48
  9. 2024Improved off-policy training of diffusion samplerscited by 47
  10. 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?cited by 46
  11. 2021Combining Latent Space and Structured Kernels for Bayesian Optimization over Combinatorial Spacescited by 45
  12. 2022LIMO: Latent Inceptionism for Targeted Molecule Generationcited by 40
38 more
  1. 2022GAUCHE: A Library for Gaussian Processes in Chemistrycited by 40
  2. 2024Genetic-guided GFlowNets for Sample Efficient Molecular Optimizationcited by 36
  3. 2023Are Random Decompositions all we need in High Dimensional Bayesian Optimisation?cited by 35
  4. 2021DOCKSTRING: easy molecular docking yields better benchmarks for ligand designcited by 33
  5. 2022Discovering Many Diverse Solutions with Bayesian Optimizationcited by 29
  6. 2023Bayesian Optimization over High-Dimensional Combinatorial Spaces via Dictionary-based Embeddingscited by 24
  7. 2021Conditioning Sparse Variational Gaussian Processes for Online Decision-makingcited by 23
  8. 2023Bootstrapped Training of Score-Conditioned Generator for Offline Design of Biological Sequencescited by 23
  9. 2024Adaptive teachers for amortized samplerscited by 23
  10. 2024A survey and benchmark of high-dimensional Bayesian optimization of discrete sequencescited by 22
  11. 2021CausalAF: Causal Autoregressive Flow for Safety-Critical Driving Scenario Generationcited by 20
  12. 2022General Intelligence Requires Rethinking Explorationcited by 20
  13. 2023The Behavior and Convergence of Local Bayesian Optimizationcited by 19
  14. 2025Understanding High-Dimensional Bayesian Optimizationcited by 19
  15. 2025Latent Bayesian Optimization via Autoregressive Normalizing Flowscited by 19
  16. 2023Advancing Bayesian Optimization via Learning Correlated Latent Spacecited by 18
  17. 2022GLSO: Grammar-guided Latent Space Optimization for Sample-efficient Robot Design Automationcited by 16
  18. 2021Deep Learning for Bayesian Optimization of Scientific Problems with High-Dimensional Structurecited by 15
  19. 2022Learning Where To Look -- Generative NAS is Surprisingly Efficientcited by 15
  20. 2022Landscape Learning for Neural Network Inversioncited by 15
  21. 2023A Framework for Demonstrating Practical Quantum Advantage: Racing Quantum against Classical Generative Modelscited by 15
  22. 2024Guided Trajectory Generation with Diffusion Models for Offline Model-based Optimizationcited by 15
  23. 2022Multi-Objective Latent Space Optimization of Generative Molecular Design Modelscited by 13
  24. 2024Improved Off-policy Reinforcement Learning in Biological Sequence Designcited by 13
  25. 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spacescited by 13
  26. 2023Continuation Path Learning for Homotopy Optimizationcited by 12
  27. 2025Posterior Inference with Diffusion Models for High-dimensional Black-box Optimizationcited by 12
  28. 2023Reinforcement Learning for Generative AI: A Surveycited by 11
  29. 2024Inversion-based Latent Bayesian Optimizationcited by 11
  30. 2024Generative Adversarial Model-Based Optimization via Source Critic Regularizationcited by 10
  31. 2025On scalable and efficient training of diffusion samplerscited by 10
  32. 2023PG-LBO: Enhancing High-Dimensional Bayesian Optimization with Pseudo-Label and Gaussian Process Guidancecited by 9
  33. 2022Conditional β-VAE for De Novo Molecular Generationcited by 8
  34. 2023Learning Regions of Interest for Bayesian Optimization with Adaptive Level-Set Estimationcited by 8
  35. 2023Molecule Design by Latent Prompt Transformercited by 8
  36. 2024Approximation-Aware Bayesian Optimizationcited by 8
  37. 2022Optimizing Training Trajectories in Variational Autoencoders via Latent Bayesian Optimization Approachcited by 7
  38. 2024Inverse Design of Copolymers Including Stoichiometry and Chain Architecturecited by 7

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