PG-LBO: Enhancing High-Dimensional Bayesian Optimization with Pseudo-Label and Gaussian Process Guidance
Not on the map. Why?
Abstract (arXiv)
Variational Autoencoder based Bayesian Optimization (VAE-BO) has demonstrated its excellent performance in addressing high-dimensional structured optimization problems. However, current mainstream methods overlook the potential of utilizing a pool of unlabeled data to construct the latent space, while only concentrating on designing sophisticated models to leverage the labeled data. Despite their effective usage of labeled data, these methods often require extra network structures, additional procedure, resulting in computational inefficiency. To address this issue, we propose a novel method to effectively utilize unlabeled data with the guidance of labeled data. Specifically, we tailor the pseudo-labeling technique from semi-supervised learning to explicitly reveal the relative magnitudes of optimization objective values hidden within the unlabeled data. Based on this technique, we assign appropriate training weights to unlabeled data to enhance the construction of a discriminative latent space. Furthermore, we treat the VAE encoder and the Gaussian Process (GP) in Bayesian optimization as a unified deep kernel learning process, allowing the direct utilization of labeled data, which we term as Gaussian Process guidance. This directly and effectively integrates the goal of improving GP accuracy into the VAE training, thereby guiding the construction of the latent space. The extensive experiments demonstrate that our proposed method outperforms existing VAE-BO algorithms in various optimization scenarios. Our code will be published at https://github.com/TaicaiChen/PG-LBO.
Key facts. Cited by 9 papers in the map (data through 14 Oct 2026). Builds on 23 of its 34 references that are in the map. First posted on arXiv 28 Dec 2023.
Builds on
23 of 34 references.
References · 23
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
- 2016Automatic chemical design using a data-driven continuous representation of moleculescited by 765
- 2018Junction Tree Variational Autoencoder for Molecular Graph Generationcited by 652
- 2020Meta Pseudo Labelscited by 374
- 2021In Defense of Pseudo-Labeling: An Uncertainty-Aware Pseudo-label Selection Framework for Semi-Supervised Learningcited by 301
- 2017Grammar Variational Autoencodercited by 285
- 2016GPflow: A Gaussian process library using TensorFlowcited by 140
- 2015High Dimensional Bayesian Optimisation and Bandits via Additive Modelscited by 139
- 2020Sample-Efficient Optimization in the Latent Space of Deep Generative Models via Weighted Retrainingcited by 123
- 2022Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoderscited by 102
- 2019D-VAE: A Variational Autoencoder for Directed Acyclic Graphscited by 98
- 2022Local Latent Space Bayesian Optimization over Structured Inputscited by 79
11 more
- 2019ChemBO: Bayesian Optimization of Small Organic Molecules with Synthesizable Recommendationscited by 77
- 2021High-Dimensional Bayesian Optimisation with Variational Autoencoders and Deep Metric Learningcited by 54
- 2017Neural networks for topology optimizationcited by 39
- 2018Semi-supervised Deep Kernel Learning: Regression with Unlabeled Data by Minimizing Predictive Variancecited by 34
- 2020Good practices for Bayesian Optimization of high dimensional structured spacescited by 24
- 2023IOMatch: Simplifying Open-Set Semi-Supervised Learning with Joint Inliers and Outliers Utilizationcited by 23
- 2020S2OSC: A Holistic Semi-Supervised Approach for Open Set Classificationcited by 15
- 2023Towards Semi-supervised Learning with Non-random Missing Labelscited by 12
- 2022Optimizing Training Trajectories in Variational Autoencoders via Latent Bayesian Optimization Approachcited by 7
- 2023High-Dimensional Bayesian Optimization via Semi-Supervised Learning with Optimized Unlabeled Data Samplingcited by 5
- 2023Inverse Protein Folding Using Deep Bayesian Optimizationcited by 1
Built on by
Citing papers per year: 2024: 5; 2025: 3; 2026: 1.
9 papers.
- 2024A survey and benchmark of high-dimensional Bayesian optimization of discrete sequencescited by 23
- 2025Latent Bayesian Optimization via Autoregressive Normalizing Flowscited by 19
- 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spacescited by 14
- 2024Inversion-based Latent Bayesian Optimizationcited by 11
- 2024EARL-BO: Reinforcement Learning for Multi-Step Lookahead, High-Dimensional Bayesian Optimizationcited by 6
- 2024PC2: Pseudo-Classification Based Pseudo-Captioning for Noisy Correspondence Learning in Cross-Modal Retrievalcited by 3
- 2025Divide-and-Conquer for Enhancing Unlabeled Learning, Stability, and Plasticity in Semi-supervised Continual Learningcited by 3
- 2026Do We Really Need to Approach the Entire Pareto Front in Many-Objective Bayesian Optimisation?cited by 2
- 2024Less is More: Pseudo-Label Filtering for Continual Test-Time Adaptationcited by 1
- 2026Do We Really Need to Approach the Entire Pareto Front in Many-Objective Bayesian Optimisation?10 Apr 2026
- 2025Divide-and-Conquer for Enhancing Unlabeled Learning, Stability, and Plasticity in Semi-supervised Continual Learning7 Aug 2025
- 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spaces5 Jul 2025
- 2025Latent Bayesian Optimization via Autoregressive Normalizing Flows21 Apr 2025
- 2024Inversion-based Latent Bayesian Optimization8 Nov 2024
- 2024EARL-BO: Reinforcement Learning for Multi-Step Lookahead, High-Dimensional Bayesian Optimization31 Oct 2024
- 2024PC2: Pseudo-Classification Based Pseudo-Captioning for Noisy Correspondence Learning in Cross-Modal Retrieval2 Aug 2024
- 2024A survey and benchmark of high-dimensional Bayesian optimization of discrete sequences7 Jun 2024
- 2024Less is More: Pseudo-Label Filtering for Continual Test-Time Adaptation3 Jun 2024