Graph2Seq: Graph to Sequence Learning with Attention-based Neural Networks
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Abstract (arXiv)
The celebrated Sequence to Sequence learning (Seq2Seq) technique and its numerous variants achieve excellent performance on many tasks. However, many machine learning tasks have inputs naturally represented as graphs; existing Seq2Seq models face a significant challenge in achieving accurate conversion from graph form to the appropriate sequence. To address this challenge, we introduce a novel general end-to-end graph-to-sequence neural encoder-decoder model that maps an input graph to a sequence of vectors and uses an attention-based LSTM method to decode the target sequence from these vectors. Our method first generates the node and graph embeddings using an improved graph-based neural network with a novel aggregation strategy to incorporate edge direction information in the node embeddings. We further introduce an attention mechanism that aligns node embeddings and the decoding sequence to better cope with large graphs. Experimental results on bAbI, Shortest Path, and Natural Language Generation tasks demonstrate that our model achieves state-of-the-art performance and significantly outperforms existing graph neural networks, Seq2Seq, and Tree2Seq models; using the proposed bi-directional node embedding aggregation strategy, the model can converge rapidly to the optimal performance.
Key facts. Cited by 36 papers in the map (data through 7 Oct 2026). First posted on arXiv 3 Apr 2018.
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Citing papers per year: 2020: 1; 2021: 13; 2022: 5; 2023: 6; 2024: 4; 2025: 6; 2026: 1.
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- 2024Retrieval-Augmented Generation with Graphs (GraphRAG)cited by 170
- 2020Retrieval-Augmented Generation for Code Summarization via Hybrid GNNcited by 89
- 2021Permutation invariant graph-to-sequence model for template-free retrosynthesis and reaction predictioncited by 66
- 2021Attention, please! A survey of Neural Attention Models in Deep Learningcited by 50
- 2021TreeBERT: A Tree-Based Pre-Trained Model for Programming Languagecited by 40
- 2023A Survey on Graph Diffusion Models: Generative AI in Science for Molecule, Protein and Materialcited by 34
- 2021Heterogeneous Global Graph Neural Networks for Personalized Session-based Recommendationcited by 22
- 2021GraphSearchNet: Enhancing GNNs via Capturing Global Dependencies for Semantic Code Searchcited by 15
- 2022M2TS: Multi-Scale Multi-Modal Approach Based on Transformer for Source Code Summarizationcited by 14
- 2024Forest2Seq: Revitalizing Order Prior for Sequential Indoor Scene Synthesiscited by 12
- 2021Medical Entity Disambiguation Using Graph Neural Networkscited by 10
- 2022TrustGNN: Graph Neural Network based Trust Evaluation via Learnable Propagative and Composable Naturecited by 10
24 more
- 2021A Research Agenda for AI Planning in the Field of Flexible Production Systemscited by 8
- 2021HAConvGNN: Hierarchical Attention Based Convolutional Graph Neural Network for Code Documentation Generation in Jupyter Notebookscited by 6
- 2024Graph-to-SFILES: Control structure prediction from process topologies using generative artificial intelligencecited by 5
- 2021Radflow: A Recurrent, Aggregated, and Decomposable Model for Networks of Time Seriescited by 3
- 2023CATS: A Pragmatic Chinese Answer-to-Sequence Dataset with Large Scale and High Qualitycited by 3
- 2023Laziness Is a Virtue When It Comes to Compositionality in Neural Semantic Parsingcited by 2
- 2023Neural Machine Translation with Dynamic Graph Convolutional Decodercited by 2
- 2021Generating Diverse Descriptions from Semantic Graphscited by 1
- 2021Triples-to-Text Generation with Reinforcement Learning Based Graph-augmented Neural Networkscited by 1
- 2022Scenario-based Multi-product Advertising Copywriting Generation for E-Commercecited by 1
- 2022Neural Controller Synthesis for Signal Temporal Logic Specifications Using Encoder-Decoder Structured Networkscited by 1
- 2023Semantic Parsing for Question Answering over Knowledge Graphscited by 1
- 2024Ask Questions with Double Hints: Visual Question Generation with Answer-awareness and Region-referencecited by 1
- 2025GEDAN: Learning the Edit Costs for Graph Edit Distancecited by 1
- 2021Understanding in Artificial Intelligencecited by 0
- 2021Graph Neural Networks for Natural Language Processing: A Surveycited by 0
- 2022Compositionality-Aware Graph2Seq Learningcited by 0
- 2023Bridging Natural Language Processing and Psycholinguistics: computationally grounded semantic similarity datasets for Basque and Spanishcited by 0
- 2025Exploring Graph Representations of Logical Forms for Language Modelingcited by 0
- 2025Simple and Effective Baselines for Code Summarisation Evaluationcited by 0
- 2025Towards Improving Interpretability of Language Model Generation through a Structured Knowledge Discovery Approachcited by 0
- 2025BIM-Native Tokenization for Constraint-Aware Room Layout Synthesiscited by 0
- 2025Evolutionary Architecture Search through Grammar-Based Sequence Alignmentcited by 0
- 2026ChronoQG: Towards a Temporally Expressive and Hop-Bounded Benchmark for Temporal Knowledge Graph Question Generationcited by 0
- 2026ChronoQG: Towards a Temporally Expressive and Hop-Bounded Benchmark for Temporal Knowledge Graph Question Generation16 Jul 2026
- 2025Evolutionary Architecture Search through Grammar-Based Sequence Alignment4 Dec 2025
- 2025BIM-Native Tokenization for Constraint-Aware Room Layout Synthesis4 Dec 2025
- 2025Towards Improving Interpretability of Language Model Generation through a Structured Knowledge Discovery Approach28 Nov 2025
- 2025GEDAN: Learning the Edit Costs for Graph Edit Distance5 Aug 2025
- 2025Simple and Effective Baselines for Code Summarisation Evaluation26 May 2025
- 2025Exploring Graph Representations of Logical Forms for Language Modeling20 May 2025
- 2024Retrieval-Augmented Generation with Graphs (GraphRAG)31 Dec 2024
- 2024Graph-to-SFILES: Control structure prediction from process topologies using generative artificial intelligence30 Nov 2024
- 2024Forest2Seq: Revitalizing Order Prior for Sequential Indoor Scene Synthesis7 Jul 2024
- 2024Ask Questions with Double Hints: Visual Question Generation with Answer-awareness and Region-reference6 Jul 2024
- 2023Semantic Parsing for Question Answering over Knowledge Graphs1 Dec 2023
24 more
- 2023CATS: A Pragmatic Chinese Answer-to-Sequence Dataset with Large Scale and High Quality20 Jun 2023
- 2023Neural Machine Translation with Dynamic Graph Convolutional Decoder28 May 2023
- 2023Laziness Is a Virtue When It Comes to Compositionality in Neural Semantic Parsing7 May 2023
- 2023Bridging Natural Language Processing and Psycholinguistics: computationally grounded semantic similarity datasets for Basque and Spanish19 Apr 2023
- 2023A Survey on Graph Diffusion Models: Generative AI in Science for Molecule, Protein and Material4 Apr 2023
- 2022Neural Controller Synthesis for Signal Temporal Logic Specifications Using Encoder-Decoder Structured Networks10 Dec 2022
- 2022TrustGNN: Graph Neural Network based Trust Evaluation via Learnable Propagative and Composable Nature25 May 2022
- 2022Scenario-based Multi-product Advertising Copywriting Generation for E-Commerce21 May 2022
- 2022M2TS: Multi-Scale Multi-Modal Approach Based on Transformer for Source Code Summarization18 Mar 2022
- 2022Compositionality-Aware Graph2Seq Learning28 Jan 2022
- 2021A Research Agenda for AI Planning in the Field of Flexible Production Systems31 Dec 2021
- 2021Triples-to-Text Generation with Reinforcement Learning Based Graph-augmented Neural Networks20 Nov 2021
- 2021GraphSearchNet: Enhancing GNNs via Capturing Global Dependencies for Semantic Code Search4 Nov 2021
- 2021Permutation invariant graph-to-sequence model for template-free retrosynthesis and reaction prediction19 Oct 2021
- 2021Generating Diverse Descriptions from Semantic Graphs12 Aug 2021
- 2021Heterogeneous Global Graph Neural Networks for Personalized Session-based Recommendation8 Jul 2021
- 2021Graph Neural Networks for Natural Language Processing: A Survey10 Jun 2021
- 2021TreeBERT: A Tree-Based Pre-Trained Model for Programming Language26 May 2021
- 2021Medical Entity Disambiguation Using Graph Neural Networks3 Apr 2021
- 2021HAConvGNN: Hierarchical Attention Based Convolutional Graph Neural Network for Code Documentation Generation in Jupyter Notebooks31 Mar 2021
- 2021Attention, please! A survey of Neural Attention Models in Deep Learning31 Mar 2021
- 2021Radflow: A Recurrent, Aggregated, and Decomposable Model for Networks of Time Series15 Feb 2021
- 2021Understanding in Artificial Intelligence17 Jan 2021
- 2020Retrieval-Augmented Generation for Code Summarization via Hybrid GNN9 Jun 2020
- 2024Retrieval-Augmented Generation with Graphs (GraphRAG)cited by 170
- 2020Retrieval-Augmented Generation for Code Summarization via Hybrid GNNcited by 89
- 2021Permutation invariant graph-to-sequence model for template-free retrosynthesis and reaction predictioncited by 66
- 2021Attention, please! A survey of Neural Attention Models in Deep Learningcited by 50
- 2021TreeBERT: A Tree-Based Pre-Trained Model for Programming Languagecited by 40
- 2021Heterogeneous Global Graph Neural Networks for Personalized Session-based Recommendationcited by 22
- 2021GraphSearchNet: Enhancing GNNs via Capturing Global Dependencies for Semantic Code Searchcited by 15
- 2022M2TS: Multi-Scale Multi-Modal Approach Based on Transformer for Source Code Summarizationcited by 14
- 2024Forest2Seq: Revitalizing Order Prior for Sequential Indoor Scene Synthesiscited by 12
- 2021Medical Entity Disambiguation Using Graph Neural Networkscited by 10
- 2022TrustGNN: Graph Neural Network based Trust Evaluation via Learnable Propagative and Composable Naturecited by 10
- 2021A Research Agenda for AI Planning in the Field of Flexible Production Systemscited by 8
- 2021HAConvGNN: Hierarchical Attention Based Convolutional Graph Neural Network for Code Documentation Generation in Jupyter Notebookscited by 6
- 2024Graph-to-SFILES: Control structure prediction from process topologies using generative artificial intelligencecited by 5
12 most cited of 33 All 33 (JSON)
- 2026ChronoQG: Towards a Temporally Expressive and Hop-Bounded Benchmark for Temporal Knowledge Graph Question Generation16 Jul 2026
- 2025Evolutionary Architecture Search through Grammar-Based Sequence Alignment4 Dec 2025
- 2025BIM-Native Tokenization for Constraint-Aware Room Layout Synthesis4 Dec 2025
- 2025Towards Improving Interpretability of Language Model Generation through a Structured Knowledge Discovery Approach28 Nov 2025
- 2025GEDAN: Learning the Edit Costs for Graph Edit Distance5 Aug 2025
- 2025Simple and Effective Baselines for Code Summarisation Evaluation26 May 2025
- 2025Exploring Graph Representations of Logical Forms for Language Modeling20 May 2025
- 2024Graph-to-SFILES: Control structure prediction from process topologies using generative artificial intelligence30 Nov 2024
- 2024Forest2Seq: Revitalizing Order Prior for Sequential Indoor Scene Synthesis7 Jul 2024
- 2024Ask Questions with Double Hints: Visual Question Generation with Answer-awareness and Region-reference6 Jul 2024
- 2023Semantic Parsing for Question Answering over Knowledge Graphs1 Dec 2023
- 2023CATS: A Pragmatic Chinese Answer-to-Sequence Dataset with Large Scale and High Quality20 Jun 2023
12 newest of 33 All 33 (JSON)