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Calibrated Derivative-Process Sensitivity for Gaussian-Process Variable Selection

arXiv 2609.33549 ↗First posted 27 Sep 2026stat.ML cs.LG cs.NAcited by 0

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Abstract (arXiv)

Automatic relevance determination (ARD), the default tool for variable selection in Gaussian-process (GP) regression, ranks inputs by inverse lengthscales -- which measure how fast a function varies, not how much an input contributes to prediction -- and offers no calibrated rule for deciding which inputs to keep. The prediction-centred alternative, the derivative sensitivity nuj = mathbbE[(partial f/partial xj)2], is available in closed form from a fitted GP, but turning it into a selection rule is harder than it looks: at a null input the estimator is a degenerate quadratic form, so Wald and Bernstein-von Mises cutoffs are anti-conservative, and the natural residual bootstrap is mis-scaled. We show that a studentized multiplier bootstrap of the GP derivative process repairs both, prove its validity through an invariance principle for quadratic forms, and obtain asymptotic family-wise and false-discovery-rate control across inputs. Over 100 replications the rule controls FDR wherever inputs are truly null, while uncalibrated derivative rankings breach the target by up to 2x and a Bernstein-von Mises cutoff by 2.2x; at matched FDR it loses no power; it holds under a Mat'ern kernel and input correlation up to 0.99; on real data with planted and authentic null inputs it admits 5-12x fewer spurious inputs; it costs 5-18% of the GP fit; and a block-averaged variant retains validity at cost linear in n.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 17 of its 49 references that are in the map. First posted on arXiv 27 Sep 2026.

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17 of 49 references.

References · 17

  1. 2021High-Dimensional Bayesian Optimization with Sparse Axis-Aligned Subspacescited by 139
  2. 2016Panning for Gold: Model-X Knockoffs for High-dimensional Controlled Variable Selectioncited by 120
  3. 2014Controlling the false discovery rate via knockoffscited by 97
  4. 2019Sequential Learning of Active Subspacescited by 16
  5. 2017Variable selection for Gaussian processes via sensitivity analysis of the posterior predictive distributioncited by 15
  6. 2013Global Sensitivity Analysis with Dependence Measurescited by 12
  7. 2017Randomized incomplete U-statistics in high dimensionscited by 12
  8. 2015Bayesian Approximate Kernel Regression with Variable Selectioncited by 6
  9. 2019Variable Selection Consistency of Gaussian Process Regressioncited by 6
  10. 2024Active Learning for Derivative-Based Global Sensitivity Analysis with Gaussian Processescited by 5
  11. 2022Towards a Unified Framework for Uncertainty-aware Nonlinear Variable Selection with Theoretical Guaranteescited by 4
  12. 2023Kernel Ridge Regression Inferencecited by 4
5 more
  1. 2015Projection predictive model selection for Gaussian processescited by 3
  2. 2018Variable Prioritization in Nonlinear Black Box Methods: A Genetic Association Case Studycited by 3
  3. 2021Kernel Knockoffs Selection for Nonparametric Additive Modelscited by 3
  4. 2023Estimation and Hypothesis Testing of Derivatives in Smoothing Spline ANOVA Modelscited by 1
  5. 2026Gradient-based Active Learning with Gaussian Processes for Global Sensitivity Analysiscited by 1

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