Calibrated Derivative-Process Sensitivity for Gaussian-Process Variable Selection
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Abstract (arXiv)
Automatic relevance determination (ARD), the default tool for variable selection in Gaussian-process (GP) regression, ranks inputs by inverse lengthscales -- which measure how fast a function varies, not how much an input contributes to prediction -- and offers no calibrated rule for deciding which inputs to keep. The prediction-centred alternative, the derivative sensitivity nuj = mathbbE[(partial f/partial xj)2], is available in closed form from a fitted GP, but turning it into a selection rule is harder than it looks: at a null input the estimator is a degenerate quadratic form, so Wald and Bernstein-von Mises cutoffs are anti-conservative, and the natural residual bootstrap is mis-scaled. We show that a studentized multiplier bootstrap of the GP derivative process repairs both, prove its validity through an invariance principle for quadratic forms, and obtain asymptotic family-wise and false-discovery-rate control across inputs. Over 100 replications the rule controls FDR wherever inputs are truly null, while uncalibrated derivative rankings breach the target by up to 2x and a Bernstein-von Mises cutoff by 2.2x; at matched FDR it loses no power; it holds under a Mat'ern kernel and input correlation up to 0.99; on real data with planted and authentic null inputs it admits 5-12x fewer spurious inputs; it costs 5-18% of the GP fit; and a block-averaged variant retains validity at cost linear in n.
Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 17 of its 49 references that are in the map. First posted on arXiv 27 Sep 2026.
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References · 17
- 2021High-Dimensional Bayesian Optimization with Sparse Axis-Aligned Subspacescited by 139
- 2016Panning for Gold: Model-X Knockoffs for High-dimensional Controlled Variable Selectioncited by 120
- 2014Controlling the false discovery rate via knockoffscited by 97
- 2019Sequential Learning of Active Subspacescited by 16
- 2017Variable selection for Gaussian processes via sensitivity analysis of the posterior predictive distributioncited by 15
- 2013Global Sensitivity Analysis with Dependence Measurescited by 12
- 2017Randomized incomplete U-statistics in high dimensionscited by 12
- 2015Bayesian Approximate Kernel Regression with Variable Selectioncited by 6
- 2019Variable Selection Consistency of Gaussian Process Regressioncited by 6
- 2024Active Learning for Derivative-Based Global Sensitivity Analysis with Gaussian Processescited by 5
- 2022Towards a Unified Framework for Uncertainty-aware Nonlinear Variable Selection with Theoretical Guaranteescited by 4
- 2023Kernel Ridge Regression Inferencecited by 4
5 more
- 2015Projection predictive model selection for Gaussian processescited by 3
- 2018Variable Prioritization in Nonlinear Black Box Methods: A Genetic Association Case Studycited by 3
- 2021Kernel Knockoffs Selection for Nonparametric Additive Modelscited by 3
- 2023Estimation and Hypothesis Testing of Derivatives in Smoothing Spline ANOVA Modelscited by 1
- 2026Gradient-based Active Learning with Gaussian Processes for Global Sensitivity Analysiscited by 1
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