Latent Commonality Expectation-Maximisation for Box-supervised Tree Crown Instance Segmentation

Individual tree crown segmentation from aerial imagery underpins tree-level carbon accounting, biodiversity, and restoration monitoring at landscape scale. However, existing models are predominantly trained on dense canopy forest imagery and degrade in savannah and drylands, where tree crowns are sparse, of variable appearance, and underrepresented in annotated benchmarks. These models also typically depend on costly polygon annotations. We introduce LACE (LAtent Commonality Expectation-maximisation), a box-supervised instance segmentation model, evaluated on 0.1 m/px aerial RGB tree crown imagery. LACE uses a frozen DINOv3-web ViT-L/16 encoder, applied at four spatial offsets and interlaced into a denser feature grid, with a lightweight CenterNet-style detection head trained solely on bounding boxes. We use expectation-maximisation to separate recurring appearance, the "treeness", within bounding boxes from surroundings. On the OAM-TCD benchmark test set, LACE reaches a mask AP50 of 0.663 ± 0.001 (3 seeds) trained on 900 box-annotated images and without mask annotations, above the 0.626 scored by Restor's released mask-supervised Mask R-CNN, which was trained on the full ~4.2k image set. On a sparse-canopy holdout set, mask AP50 rises to 0.691 versus 0.612 for Detectree2, a mask-supervised baseline. On NeonTreeEvaluation, using the official evaluation code, LACE reaches 0.728 ± 0.003 [email protected] (5 seeds) from 23,424 hand-annotated RGB boxes alone, matching the authors' DeepForest model's published 0.719, using under 0.1% of its training annotations and none of its LiDAR-derived 30M-crown pretraining set. By leveraging frozen self-supervised features, LACE matches or surpasses fully-supervised specialist baselines from boxes alone, removing the need for polygon annotation in tree crown instance segmentation for sparse-canopy environments where labelled data is scarce.