mlsanityData to 7 Oct 2026

Beyond MSE: Rethinking the Evaluation Metric and Benchmarking for Irregular Time Series Forecasting

arXiv 2608.17293 ↗First posted 18 Aug 2026cs.LG cs.AIcited by 0

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Abstract (arXiv)

Existing research on irregular time-series forecasting has primarily focused on model design, while evaluation metrics remain insufficiently studied. Existing benchmarks typically use mean squared error (MSE) as the evaluation metric. We show that, in irregular forecasting, MSE is determined not only by the model prediction but also by the sample-specific timestamp sampling distributions, leading to a biased assessment of the models' continuous-time predictive performance. To address this issue, we propose the Continuous-time Squared Error (CSE), which employs importance weighting to eliminate the influence of the timestamp sampling distributions. We further theoretically prove that CSE's asymptotic estimation error with respect to continuous-time risk is no greater than that of MSE. Finally, we construct a systematic benchmark covering synthetic, semi-synthetic, and eight real-world datasets to validate the effectiveness of CSE and systematically evaluate models' continuous-time predictive performance. Experiments show that CSE can recover continuous-time risk more accurately than MSE, while relying solely on MSE may not fully reflect models' continuous-time predictive performance in real-world scenarios. Our code can be obtained at https://github.com/hnu-vis/ITS-Bench.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 14 of its 26 references that are in the map. First posted on arXiv 18 Aug 2026.

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References · 14

  1. 2021Autoformer: Decomposition Transformers with Auto-Correlation for Long-Term Series Forecastingcited by 1,654
  2. 2016Recurrent Neural Networks for Multivariate Time Series with Missing Valuescited by 548
  3. 2020Neural Controlled Differential Equations for Irregular Time Seriescited by 501
  4. 2021Multi-Time Attention Networks for Irregularly Sampled Time Seriescited by 234
  5. 2019Set Functions for Time Seriescited by 137
  6. 2021Graph-Guided Network for Irregularly Sampled Multivariate Time Seriescited by 110
  7. 2021Modeling Irregular Time Series with Continuous Recurrent Unitscited by 101
  8. 2021Neural Flows: Efficient Alternative to Neural ODEscited by 99
  9. 2023Warpformer: A Multi-scale Modeling Approach for Irregular Clinical Time Seriescited by 54
  10. 2025Rethinking Irregular Time Series Forecasting: A Simple yet Effective Baselinecited by 54
  11. 2025Physiome-ODE: A Benchmark for Irregularly Sampled Multivariate Time Series Forecasting Based on Biological ODEscited by 10
  12. 2025PYRREGULAR: A Unified Framework for Irregular Time Series, with Classification Benchmarkscited by 6
2 more
  1. 2024Benchmarking with MIMIC-IV, an irregular, spare clinical time series datasetcited by 5
  2. 2025Revitalizing Canonical Pre-Alignment for Irregular Multivariate Time Series Forecastingcited by 5

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