Reconfigurable Radiology Labels Without Relabeling
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Abstract (arXiv)
Public chest-radiograph (CXR) datasets are typically released with small, fixed label schemas such as CheXpert-14. However, the underlying free-text reports describe far more findings -- and which findings matter depends on the task, site, and reader. We release a pipeline that converts free-text reports into multi-label matrices and then reconfigures the label schema through dictionary edits rather than new inference passes, i.e., without relabeling the corpus. After this one-time pass, reconfiguring MIMIC-CXR (223K reports) from cached annotations takes 196 seconds with no API cost, compared to 6.6K for an equivalent relabeling pass with Claude Opus 4.7. Using a 58-label taxonomy, we show that 43% of CXR studies contain at least one finding outside CheXpert-14. Image probes trained on these labels match CheXpert-14 probes on shared targets while also reaching 0.78 AUROC on expert-reviewed long-tail labels that CheXpert-14 cannot represent. These results suggest a different unit of work for radiology labeling: once reports are structured, the label schema becomes a configuration to edit, not a corpus to relabel.
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References · 12
- 2023DINOv2: Learning Robust Visual Features without Supervisioncited by 7,764
- 2022A ConvNet for the 2020scited by 3,545
- 2019CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparisoncited by 1,410
- 2020CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERTcited by 329
- 2021RadGraph: Extracting Clinical Entities and Relations from Radiology Reportscited by 310
- 2019PadChest: A large chest x-ray image dataset with multi-label annotated reportscited by 308
- 2019Hidden Stratification Causes Clinically Meaningful Failures in Machine Learning for Medical Imagingcited by 215
- 2024CheXpert Plus: Augmenting a Large Chest X-ray Dataset with Text Radiology Reports, Patient Demographics and Additional Image Formatscited by 100
- 2017NegBio: a high-performance tool for negation and uncertainty detection in radiology reportscited by 79
- 2022Long-Tailed Classification of Thorax Diseases on Chest X-Ray: A New Benchmark Studycited by 45
- 2024PadChest-GR: A Bilingual Chest X-ray Dataset for Grounded Radiology Report Generationcited by 35
- 2019Caveats in Generating Medical Imaging Labels from Radiology Reportscited by 9
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