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Generative structure search for efficient and diverse discovery of molecular and crystal structures

arXiv 2604.27636 ↗First posted 30 Apr 2026cs.AIcited by 0

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Abstract (arXiv)

Predicting stable and metastable structures is central to molecular and materials discovery, but remains limited by the cost of searching high-dimensional energy landscapes. Deep generative models offer efficient structure sampling, yet their outputs remain shaped by training data and can underexplore minima that are rare but physically relevant. We introduce generative structure search (GSS), a unified framework that formulates diffusion-based generation and random structure search (RSS) as limiting regimes of a common sampling process driven by learned score fields and physical forces. Coupling these drivers lets GSS use data priors to accelerate sampling while retaining energy-guided exploration of local minima. Across molecular and crystalline systems, GSS recovers diverse metastable structures with more than tenfold lower sampling cost than RSS for broad coverage and remains effective for compositions outside the training distribution. The results establish a physically grounded generative search strategy for discovering structures beyond the reach of data-driven sampling alone.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 11 of its 28 references that are in the map. First posted on arXiv 30 Apr 2026.

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11 of 28 references.

References · 11

  1. 2020Denoising Diffusion Probabilistic Modelscited by 20,851
  2. 2020Score-Based Generative Modeling through Stochastic Differential Equationscited by 8,964
  3. 2021Diffusion Models Beat GANs on Image Synthesiscited by 8,185
  4. 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,005
  5. 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generationcited by 511
  6. 2023Contrastive Energy Prediction for Exact Energy-Guided Diffusion Sampling in Offline Reinforcement Learningcited by 145
  7. 2023Crystal Structure Prediction by Joint Equivariant Diffusioncited by 142
  8. 2024TFG: Unified Training-Free Guidance for Diffusion Modelscited by 103
  9. 2025UMA: A Family of Universal Models for Atomscited by 99
  10. 2022Large-scale machine-learning-assisted exploration of the whole materials spacecited by 13
  11. 2025High-order Equivariant Flow Matching for Density Functional Theory Hamiltonian Predictioncited by 10

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  1. 2024Generative Inverse Design of Crystal Structures via Diffusion Models with Transformers
  2. 2025Introducing physics-informed generative models for targeting structural novelty in the exploration of chemical space
  3. 2026Deep Generative Crystal Structure Prediction: A Benchmark Study and a Controlled Test of Prototype Dependence
  4. 2026Let CSP Be Your ANCHOR: Adaptive Crystal Search over Frozen Structure Priors
  5. 2026Towards Automated Discovery: A Review of Generative Models, Multimodal Learning and Closed-Loop Workflows in Inverse Materials Design
  6. 2025Guiding Generative Models to Uncover Diverse and Novel Crystals via Reinforcement Learning
  7. 2024Unleashing the power of novel conditional generative approaches for new materials discovery
  8. 2026Finetuning-Free Diffusion Model with Adaptive Constraint Guidance for Inorganic Crystal Structure Generation