Addressing data annotation scarcity in Brain Tumor Segmentation on 3D MRI scan Using a Semi-Supervised Teacher-Student Framework
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Abstract (arXiv)
Accurate brain tumor segmentation from MRI is limited by expensive annotations and data heterogeneity across scanners and sites. We propose a semi-supervised teacher-student framework that combines an uncertainty-aware pseudo-labeling teacher with a progressive, confidence-based curriculum for the student. The teacher produces probabilistic masks and per-pixel uncertainty; unlabeled scans are ranked by image-level confidence and introduced in stages, while a dual-loss objective trains the student to learn from high-confidence regions and unlearn low-confidence ones. Agreement-based refinement further improves pseudo-label quality. On BraTS 2021, validation DSC increased from 0.393 (10% data) to 0.872 (100%), with the largest gains in early stages, demonstrating data efficiency. The teacher reached a validation DSC of 0.922, and the student surpassed the teacher on tumor subregions (e.g., NCR/NET 0.797 and Edema 0.980); notably, the student recovered the Enhancing class (DSC 0.620) where the teacher failed. These results show that confidence-driven curricula and selective unlearning provide robust segmentation under limited supervision and noisy pseudo-labels.
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References · 10
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 2021Semi-Supervised Semantic Segmentation with Cross Pseudo Supervisioncited by 462
- 2019Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentationcited by 378
- 2020Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Imagescited by 152
- 2021Mutual Consistency Learning for Semi-supervised Medical Image Segmentationcited by 107
- 2023MAPSeg: Unified Unsupervised Domain Adaptation for Heterogeneous Medical Image Segmentation Based on 3D Masked Autoencoding and Pseudo-Labelingcited by 25
- 2024Semi-Supervised Semantic Segmentation Based on Pseudo-Labels: A Surveycited by 12
- 2025DyCON: Dynamic Uncertainty-aware Consistency and Contrastive Learning for Semi-supervised Medical Image Segmentationcited by 8
- 2024Improved Unet model for brain tumor image segmentation based on ASPP-coordinate attention mechanismcited by 2
- 2024Uncertainty-Guided Cross Attention Ensemble Mean Teacher for Semi-supervised Medical Image Segmentationcited by 2
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