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Addressing data annotation scarcity in Brain Tumor Segmentation on 3D MRI scan Using a Semi-Supervised Teacher-Student Framework

arXiv 2602.08797 ↗First posted 9 Feb 2026cs.CV cs.AIcited by 0

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Abstract (arXiv)

Accurate brain tumor segmentation from MRI is limited by expensive annotations and data heterogeneity across scanners and sites. We propose a semi-supervised teacher-student framework that combines an uncertainty-aware pseudo-labeling teacher with a progressive, confidence-based curriculum for the student. The teacher produces probabilistic masks and per-pixel uncertainty; unlabeled scans are ranked by image-level confidence and introduced in stages, while a dual-loss objective trains the student to learn from high-confidence regions and unlearn low-confidence ones. Agreement-based refinement further improves pseudo-label quality. On BraTS 2021, validation DSC increased from 0.393 (10% data) to 0.872 (100%), with the largest gains in early stages, demonstrating data efficiency. The teacher reached a validation DSC of 0.922, and the student surpassed the teacher on tumor subregions (e.g., NCR/NET 0.797 and Edema 0.980); notably, the student recovered the Enhancing class (DSC 0.620) where the teacher failed. These results show that confidence-driven curricula and selective unlearning provide robust segmentation under limited supervision and noisy pseudo-labels.

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References · 10

  1. 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
  2. 2021Semi-Supervised Semantic Segmentation with Cross Pseudo Supervisioncited by 462
  3. 2019Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentationcited by 378
  4. 2020Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Imagescited by 152
  5. 2021Mutual Consistency Learning for Semi-supervised Medical Image Segmentationcited by 107
  6. 2023MAPSeg: Unified Unsupervised Domain Adaptation for Heterogeneous Medical Image Segmentation Based on 3D Masked Autoencoding and Pseudo-Labelingcited by 25
  7. 2024Semi-Supervised Semantic Segmentation Based on Pseudo-Labels: A Surveycited by 12
  8. 2025DyCON: Dynamic Uncertainty-aware Consistency and Contrastive Learning for Semi-supervised Medical Image Segmentationcited by 8
  9. 2024Improved Unet model for brain tumor image segmentation based on ASPP-coordinate attention mechanismcited by 2
  10. 2024Uncertainty-Guided Cross Attention Ensemble Mean Teacher for Semi-supervised Medical Image Segmentationcited by 2

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