Leveraging LLMs for Collaborative Ontology Engineering in Parkinson Disease Monitoring and Alerting
On the map: LLM reasoning → Clinical and biomedical applications
Abstract (arXiv)
This paper explores the integration of Large Language Models (LLMs) in the engineering of a Parkinson's Disease (PD) monitoring and alerting ontology through four key methodologies: One Shot (OS) prompt techniques, Chain of Thought (CoT) prompts, X-HCOME, and SimX-HCOME+. The primary objective is to determine whether LLMs alone can create comprehensive ontologies and, if not, whether human-LLM collaboration can achieve this goal. Consequently, the paper assesses the effectiveness of LLMs in automated ontology development and the enhancement achieved through human-LLM collaboration. Initial ontology generation was performed using One Shot (OS) and Chain of Thought (CoT) prompts, demonstrating the capability of LLMs to autonomously construct ontologies for PD monitoring and alerting. However, these outputs were not comprehensive and required substantial human refinement to enhance their completeness and accuracy. X-HCOME, a hybrid ontology engineering approach that combines human expertise with LLM capabilities, showed significant improvements in ontology comprehensiveness. This methodology resulted in ontologies that are very similar to those constructed by experts. Further experimentation with SimX-HCOME+, another hybrid methodology emphasizing continuous human supervision and iterative refinement, highlighted the importance of ongoing human involvement. This approach led to the creation of more comprehensive and accurate ontologies. Overall, the paper underscores the potential of human-LLM collaboration in advancing ontology engineering, particularly in complex domains like PD. The results suggest promising directions for future research, including the development of specialized GPT models for ontology construction.
Key facts. No citing papers in the map yet (data through 14 Oct 2026). Placed in Clinical and biomedical applications, one of 17 directions in LLM reasoning. Builds on 10 of its 36 references that are in the map. First posted on arXiv 16 Dec 2025.
Builds on
10 of 36 references.
References · 10
- 2022PaLM: Scaling Language Modeling with Pathwayscited by 5,326
- 2023Unifying Large Language Models and Knowledge Graphs: A Roadmapcited by 668
- 2023Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learningcited by 50
- 2021BERTMap: A BERT-based Ontology Alignment Systemcited by 46
- 2023Towards Ontology Construction with Language Modelscited by 23
- 2023Neurosymbolic AI -- Why, What, and Howcited by 19
- 2023Ontology engineering with Large Language Modelscited by 17
- 2023Pre-trained Embeddings for Entity Resolution: An Experimental Analysis [Experiment, Analysis & Benchmark]cited by 13
- 2023Gene Set Summarization using Large Language Modelscited by 12
- 2021Automatic Product Ontology Extraction from Textual Reviewscited by 2
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- 2024Entry-level guide to the use of large language models for medical research
- 2025Reasoning LLMs in the Medical Domain: A Literature Survey
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