mlsanityData to 14 Oct 2026

Genomic Next-Token Predictors are In-Context Learners

arXiv 2511.12797 ↗First posted 16 Nov 2025cs.LG cs.AI q-bio.GNcited by 1

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Abstract (arXiv)

In-context learning (ICL) -- the capacity of a model to infer and apply abstract patterns from examples provided within its input -- has been extensively studied in large language models trained for next-token prediction on human text. In fact, prior work often attributes this emergent behavior to distinctive statistical properties in human language. This raises a fundamental question: can ICL arise organically in other sequence domains purely through large-scale predictive training? To explore this, we turn to genomic sequences, an alternative symbolic domain rich in statistical structure. Specifically, we study the Evo2 genomic model, trained predominantly on next-nucleotide (A/T/C/G) prediction, at a scale comparable to mid-sized LLMs. We develop a controlled experimental framework comprising symbolic reasoning tasks instantiated in both linguistic and genomic forms, enabling direct comparison of ICL across genomic and linguistic models. Our results show that genomic models, like their linguistic counterparts, exhibit log-linear gains in pattern induction as the number of in-context demonstrations increases. To the best of our knowledge, this is the first evidence of organically emergent ICL in genomic sequences, supporting the hypothesis that ICL arises as a consequence of large-scale predictive modeling over rich data. These findings extend emergent meta-learning beyond language, pointing toward a unified, modality-agnostic view of in-context learning.

Key facts. Cited by 1 paper in the map (data through 14 Oct 2026). Builds on 69 of its 96 references that are in the map. First posted on arXiv 16 Nov 2025.

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69 of 96 references.

References · 69

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38 more
  1. 2022In-context Learning and Induction Headscited by 964
  2. 2021An Explanation of In-context Learning as Implicit Bayesian Inferencecited by 938
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  4. 2025Reflection Pretraining Enables Token-Level Self-Correction in Biological Sequence Models
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