Instability in Downstream Task Performance During LLM Pretraining

When training large language models (LLMs), it is common practice to track downstream task performance throughout the training process and select the checkpoint with the highest validation score. However, downstream metrics often exhibit substantial fluctuations, making it difficult to identify the checkpoint that truly represents the best-performing model. In this study, we empirically analyze the stability of downstream task performance in an LLM trained on diverse web-scale corpora. We find that task scores frequently fluctuate throughout training, both at the aggregate and example levels. To address this instability, we investigate two post-hoc checkpoint integration methods: checkpoint averaging and ensemble, motivated by the hypothesis that aggregating neighboring checkpoints can reduce performance volatility. We demonstrate both empirically and theoretically that these methods improve downstream performance stability without requiring any changes to the training procedure.