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Differentiable Structure Learning and Causal Discovery for General Binary Data

arXiv 2509.21658 ↗First posted 25 Sep 2025cs.LG math.ST stat.MEcited by 0

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Abstract (arXiv)

Existing methods for differentiable structure learning in discrete data typically assume that the data are generated from specific structural equation models. However, these assumptions may not align with the true data-generating process, which limits the general applicability of such methods. Furthermore, current approaches often ignore the complex dependence structure inherent in discrete data and consider only linear effects. We propose a differentiable structure learning framework that is capable of capturing arbitrary dependencies among discrete variables. We show that although general discrete models are unidentifiable from purely observational data, it is possible to characterize the complete set of compatible parameters and structures. Additionally, we establish identifiability up to Markov equivalence under mild assumptions. We formulate the learning problem as a single differentiable optimization task in the most general form, thereby avoiding the unrealistic simplifications adopted by previous methods. Empirical results demonstrate that our approach effectively captures complex relationships in discrete data.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 30 of its 57 references that are in the map. First posted on arXiv 25 Sep 2025.

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References · 30

  1. 2018DAGs with NO TEARS: Continuous Optimization for Structure Learningcited by 752
  2. 2019DAG-GNN: DAG Structure Learning with Graph Neural Networkscited by 331
  3. 2013Causal Discovery with Continuous Additive Noise Modelscited by 255
  4. 2019Gradient-Based Neural DAG Learningcited by 227
  5. 2019Learning Sparse Nonparametric DAGscited by 207
  6. 2020On the Role of Sparsity and DAG Constraints for Learning Linear DAGscited by 191
  7. 2013Learning Bayesian Networks: The Combination of Knowledge and Statistical Datacited by 187
  8. 2019Causal Discovery from Heterogeneous/Nonstationary Data with Independent Changescited by 166
  9. 2019Causal Discovery with Reinforcement Learningcited by 145
  10. 2022DAGMA: Learning DAGs via M-matrices and a Log-Determinant Acyclicity Characterizationcited by 140
  11. 2020DAGs with No Fears: A Closer Look at Continuous Optimization for Learning Bayesian Networkscited by 66
  12. 2022Greedy Relaxations of the Sparsest Permutation Algorithmcited by 64
18 more
  1. 2022Causal de Finetti: On the Identification of Invariant Causal Structure in Exchangeable Datacited by 42
  2. 2020On the Convergence of Continuous Constrained Optimization for Structure Learningcited by 38
  3. 2023Fast Scalable and Accurate Discovery of DAGs Using the Best Order Score Search and Grow-Shrink Treescited by 38
  4. 2023Stable Differentiable Causal Discoverycited by 31
  5. 2022Truncated Matrix Power Iteration for Differentiable DAG Learningcited by 23
  6. 2022Optimal estimation of Gaussian DAG modelscited by 17
  7. 2023Optimizing NOTEARS Objectives via Topological Swapscited by 17
  8. 2022Distributed Learning of Generalized Linear Causal Networkscited by 13
  9. 2014Penalized Estimation of Directed Acyclic Graphs From Discrete Datacited by 10
  10. 2023Global Optimality in Bivariate Gradient-based DAG Learningcited by 10
  11. 2018Causal Inference on Discrete Data via Estimating Distance Correlationscited by 8
  12. 2021High-dimensional Functional Graphical Model Structure Learning via Neighborhood Selection Approachcited by 7
  13. 2024Markov Equivalence and Consistency in Differentiable Structure Learningcited by 7
  14. 2025Analytic DAG Constraints for Differentiable DAG Learningcited by 5
  15. 2018Combining Linear Non-Gaussian Acyclic Model with Logistic Regression Model for Estimating Causal Structure from Mixed Continuous and Discrete Datacited by 2
  16. 2024Greedy equivalence search for nonparametric graphical modelscited by 2
  17. 2024A Complete Decomposition of KL Error using Refined Information and Mode Interaction Selectioncited by 2
  18. 2024Personalized Binomial DAGs Learning with Network Structured Covariatescited by 1

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