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DeepEOSNet: Capturing the dependency on thermodynamic state in property prediction tasks

arXiv 2509.17018 ↗First posted 21 Sep 2025physics.chem-ph cs.LGcited by 0

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Abstract (arXiv)

We propose a machine learning (ML) architecture to better capture the dependency of thermodynamic properties on the independent states. When predicting state-dependent thermodynamic properties, ML models need to account for both molecular structure and the thermodynamic state, described by independent variables, typically temperature, pressure, and composition. Modern molecular ML models typically include state information by adding it to molecular fingerprint vectors or by embedding explicit (semi-empirical) thermodynamic relations. Here, we propose to rather split the information processing on the molecular structure and the dependency on states into two separate network channels: a graph neural network and a multilayer perceptron, whose output is combined by a dot product. We refer to our approach as DeepEOSNet, as this idea is based on the DeepONet architecture [Lu et al. (2021), Nat. Mach. Intell.]: instead of operators, we learn state dependencies, with the possibility to predict equation of states (EOS). We investigate the predictive performance of DeepEOSNet by means of three case studies, which include the prediction of vapor pressure as a function of temperature, and mixture molar volume as a function of composition, temperature, and pressure. Our results show superior performance of DeepEOSNet for predicting vapor pressure and comparable performance for predicting mixture molar volume compared to state-of-research graph-based thermodynamic prediction models from our earlier works. In fact, we see large potential of DeepEOSNet in cases where data is sparse in the state domain and the output function is structurally similar across different molecules. The concept of DeepEOSNet can easily be transferred to other ML architectures in molecular context, and thus provides a viable option for property prediction.

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References · 20

  1. 2017Neural Message Passing for Quantum Chemistrycited by 3,487
  2. 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,434
  3. 2019DeepONet: Learning nonlinear operators for identifying differential equations based on the universal approximation theorem of operatorscited by 2,018
  4. 2020Bayesian Deep Learning and a Probabilistic Perspective of Generalizationcited by 480
  5. 2022Graph neural networks for materials science and chemistrycited by 182
  6. 2022A smile is all you need: Predicting limiting activity coefficients from SMILES with natural language processingcited by 19
  7. 2023Gibbs-Duhem-Informed Neural Networks for Binary Activity Coefficient Predictioncited by 17
  8. 2024HANNA: Hard-constraint Neural Network for Consistent Activity Coefficient Predictioncited by 17
  9. 2022SplitNets: Designing Neural Architectures for Efficient Distributed Computing on Head-Mounted Systemscited by 14
  10. 2022Graph Neural Networks for Temperature-Dependent Activity Coefficient Prediction of Solutes in Ionic Liquidscited by 14
  11. 2022DeepGraphONet: A Deep Graph Operator Network to Learn and Zero-shot Transfer the Dynamic Response of Networked Systemscited by 14
  12. 2022Graph neural networks for the prediction of molecular structure-property relationshipscited by 12
8 more
  1. 2022Gibbs-Helmholtz Graph Neural Network: capturing the temperature dependency of activity coefficients at infinite dilutioncited by 12
  2. 2024Thermodynamics-Consistent Graph Neural Networkscited by 12
  3. 2022SPT-NRTL: A physics-guided machine learning model to predict thermodynamically consistent activity coefficientscited by 11
  4. 2023PUFFIN: A Path-Unifying Feed-Forward Interfaced Network for Vapor Pressure Predictioncited by 8
  5. 2025GRAPPA -- A Hybrid Graph Neural Network for Predicting Pure Component Vapor Pressurescited by 6
  6. 2025Molecular Machine Learning in Chemical Process Designcited by 5
  7. 2024Predicting the Temperature-Dependent CMC of Surfactant Mixtures with Graph Neural Networkscited by 3
  8. 2025Graph Neural Networks embedded into Margules model for vapor-liquid equilibria predictioncited by 2

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