OwkinZero: Accelerating Biological Discovery with AI
On the map: LLM reasoning → Clinical and biomedical applications
Abstract (arXiv)
While large language models (LLMs) are rapidly advancing scientific research, they continue to struggle with core biological reasoning tasks essential for translational and biomedical discovery. To address this limitation, we created and curated eight comprehensive benchmark datasets comprising over 300,000 verifiable question-and-answer pairs, each targeting critical challenges in drug discovery including target druggability, modality suitability, and drug perturbation effects. Using this resource, we developed the OwkinZero models by post-training open-source LLMs through a Reinforcement Learning from Verifiable Rewards strategy. Our results demonstrate that specialized 8-32B OwkinZero models substantially outperform larger, state-of-the-art commercial LLMs on these biological benchmarks. Remarkably, we uncover evidence of a key aspect of generalization: specialist models trained on a single task consistently outperform their base models on previously unseen tasks. This generalization effect is further amplified in our comprehensive OwkinZero models, which were trained on a mixture of datasets and achieve even broader cross-task improvements. This study represents a significant step toward addressing the biological reasoning blind spot in current LLMs, demonstrating that targeted reinforcement learning on carefully curated data can unlock generalizable performance in specialized models, thereby accelerating AI-driven biological discovery.
Key facts. Cited by 4 papers in the map (data through 14 Oct 2026). Placed in Clinical and biomedical applications, one of 17 directions in LLM reasoning. Builds on 17 of its 51 references that are in the map. First posted on arXiv 22 Aug 2025.
Builds on
17 of 51 references.
Closest ancestors · 2
Same direction, newest first
- 2025Training a Scientific Reasoning Model for Chemistry4 Jun
- 2025BioMaze: Benchmarking and Enhancing Large Language Models for Biological Pathway Reasoning23 Feb
Other references · 15
- 2022Chain-of-Thought Prompting Elicits Reasoning in Large Language Modelscited by 12,459
- 2024DeepSeekMath: Pushing the Limits of Mathematical Reasoning in Open Language Modelscited by 9,379
- 2025DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learningcited by 6,330
- 2025DAPO: An Open-Source LLM Reinforcement Learning System at Scalecited by 2,810
- 2024Scaling LLM Test-Time Compute Optimally can be More Effective than Scaling Model Parameterscited by 1,986
- 2025Search-R1: Training LLMs to Reason and Leverage Search Engines with Reinforcement Learningcited by 1,444
- 2025Understanding R1-Zero-Like Training: A Critical Perspectivecited by 1,345
- 2023Language Models Don't Always Say What They Think: Unfaithful Explanations in Chain-of-Thought Promptingcited by 1,122
- 2025Open-Reasoner-Zero: An Open Source Approach to Scaling Up Reinforcement Learning on the Base Modelcited by 461
- 2025Accelerating scientific discovery with Co-Scientistcited by 401
- 2024LAB-Bench: Measuring Capabilities of Language Models for Biology Researchcited by 156
- 2024Making Reasoning Matter: Measuring and Improving Faithfulness of Chain-of-Thought Reasoningcited by 110
Built on by
Citing papers per year: 2025: 1; 2026: 3.
4 papers.
- 2025A Survey of Reinforcement Learning for Large Reasoning Modelscited by 180
- 2026Reward Modeling for Reinforcement Learning-Based LLM Reasoning: Design, Challenges, and Evaluationcited by 7
- 2026Reasoning4Sciences: Bridging Reasoning Language Models to All Scientific Branchescited by 0
- 2026PertMind: Eliciting Emergent Biological Reasoning in LLM via Reinforcement Learning on Cellular Perturbation Datacited by 0
- 2026PertMind: Eliciting Emergent Biological Reasoning in LLM via Reinforcement Learning on Cellular Perturbation Data17 Aug 2026
- 2026Reasoning4Sciences: Bridging Reasoning Language Models to All Scientific Branches31 May 2026
- 2026Reward Modeling for Reinforcement Learning-Based LLM Reasoning: Design, Challenges, and Evaluation10 Feb 2026
- 2025A Survey of Reinforcement Learning for Large Reasoning Models10 Sep 2025
Similar, not cited
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