mlsanityData to 7 Oct 2026

TxGemma: Efficient and Agentic LLMs for Therapeutics

arXiv 2504.06196 ↗First posted 8 Apr 2025cs.AI cs.CL cs.LGcited by 40

On the map: LLM agents and tool use → Medical and scientific domain agents

Abstract (arXiv)

Therapeutic development is a costly and high-risk endeavor that is often plagued by high failure rates. To address this, we introduce TxGemma, a suite of efficient, generalist large language models (LLMs) capable of therapeutic property prediction as well as interactive reasoning and explainability. Unlike task-specific models, TxGemma synthesizes information from diverse sources, enabling broad application across the therapeutic development pipeline. The suite includes 2B, 9B, and 27B parameter models, fine-tuned from Gemma-2 on a comprehensive dataset of small molecules, proteins, nucleic acids, diseases, and cell lines. Across 66 therapeutic development tasks, TxGemma achieved superior or comparable performance to the state-of-the-art generalist model on 64 (superior on 45), and against state-of-the-art specialist models on 50 (superior on 26). Fine-tuning TxGemma models on therapeutic downstream tasks, such as clinical trial adverse event prediction, requires less training data than fine-tuning base LLMs, making TxGemma suitable for data-limited applications. Beyond these predictive capabilities, TxGemma features conversational models that bridge the gap between general LLMs and specialized property predictors. These allow scientists to interact in natural language, provide mechanistic reasoning for predictions based on molecular structure, and engage in scientific discussions. Building on this, we further introduce Agentic-Tx, a generalist therapeutic agentic system powered by Gemini 2.5 that reasons, acts, manages diverse workflows, and acquires external domain knowledge. Agentic-Tx surpasses prior leading models on the Humanity's Last Exam benchmark (Chemistry & Biology) with 52.3% relative improvement over o3-mini (high) and 26.7% over o3-mini (high) on GPQA (Chemistry) and excels with improvements of 6.3% (ChemBench-Preference) and 2.4% (ChemBench-Mini) over o3-mini (high).

Key facts. Cited by 40 papers in the map (data through 7 Oct 2026). Placed in Medical and scientific domain agents, one of 16 directions in LLM agents and tool use. Builds on 38 of its 290 references that are in the map. First posted on arXiv 8 Apr 2025.

Builds on

38 of 290 references.

Closest ancestors · 1

Same direction, newest first

  1. 2025TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools14 Mar

Other references · 37

  1. 2022ReAct: Synergizing Reasoning and Acting in Language Modelscited by 8,355
  2. 2020Measuring Massive Multitask Language Understandingcited by 7,768
  3. 2023Sparks of Artificial General Intelligence: Early experiments with GPT-4cited by 2,579
  4. 2024Gemma 2: Improving Open Language Models at a Practical Sizecited by 1,928
  5. 2023MetaGPT: Meta Programming for A Multi-Agent Collaborative Frameworkcited by 1,761
  6. 2024SWE-agent: Agent-Computer Interfaces Enable Automated Software Engineeringcited by 1,628
  7. 2024The AI Scientist: Towards Fully Automated Open-Ended Scientific Discoverycited by 1,002
  8. 2019Strategies for Pre-training Graph Neural Networkscited by 964
  9. 2023ChatDev: Communicative Agents for Software Developmentcited by 893
  10. 2024Gemma: Open Models Based on Gemini Research and Technologycited by 889
  11. 2023Reasoning with Language Model is Planning with World Modelcited by 846
  12. 2023Gemini: A Family of Highly Capable Multimodal Modelscited by 810
25 more
  1. 2022Galactica: A Large Language Model for Sciencecited by 736
  2. 2023Instruction Tuning for Large Language Models: A Surveycited by 617
  3. 2019Text Summarization with Pretrained Encoderscited by 553
  4. 2025Humanity's Last Examcited by 467
  5. 2025Agent Laboratory: Using LLM Agents as Research Assistantscited by 405
  6. 2023Describe, Explain, Plan and Select: Interactive Planning with Large Language Models Enables Open-World Multi-Task Agentscited by 396
  7. 2025Accelerating scientific discovery with Co-Scientistcited by 353
  8. 2023Multi-Agent Collaboration: Harnessing the Power of Intelligent LLM Agentscited by 329
  9. 2023Large Language Models as Tool Makerscited by 293
  10. 2023A Survey of Reinforcement Learning from Human Feedbackcited by 259
  11. 2021Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Developmentcited by 258
  12. 2022TALM: Tool Augmented Language Modelscited by 197
  13. 2024LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Datasetcited by 124
  14. 2024Language agents achieve superhuman synthesis of scientific knowledgecited by 121
  15. 2023BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associationscited by 100
  16. 2023Experiential Co-Learning of Software-Developing Agentscited by 57
  17. 2017Learning Graph-Level Representation for Drug Discoverycited by 43
  18. 2025Nature Language Model: Deciphering the Language of Nature for Scientific Discoverycited by 35
  19. 2024Are large language models superhuman chemists?cited by 34
  20. 2023Catastrophic Forgetting in Deep Learning: A Comprehensive Taxonomycited by 24
  21. 2024Tx-LLM: A Large Language Model for Therapeuticscited by 23
  22. 2024ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Trainingcited by 21
  23. 2023Otter-Knowledge: benchmarks of multimodal knowledge graph representation learning from different sources for drug discoverycited by 10
  24. 2023Structure to Property: Chemical Element Embeddings and a Deep Learning Approach for Accurate Prediction of Chemical Propertiescited by 6
  25. 2024TrialBench: Multi-Modal Artificial Intelligence-Ready Clinical Trial Datasetscited by 5

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2025: 20; 2026: 20.

40 papers.

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  1. 2025Robin: A multi-agent system for automating scientific discoverycited by 57
  2. 2025El Agente: An Autonomous Agent for Quantum Chemistrycited by 43
  3. 2025Med-PRM: Medical Reasoning Models with Stepwise, Guideline-verified Process Rewardscited by 24
  4. 2025Assessing the Chemical Intelligence of Large Language Modelscited by 14
  5. 2025STELLA: Self-Evolving LLM Agent for Biomedical Researchcited by 10
  6. 2025LLM Agent Swarm for Hypothesis-Driven Drug Discoverycited by 8
  7. 2025Learning Flexible Forward Trajectories for Masked Molecular Diffusioncited by 6
  8. 2025MTBBench: A Multimodal Sequential Clinical Decision-Making Benchmark in Oncologycited by 6
  9. 2025CoTox: Chain-of-Thought-Based Molecular Toxicity Reasoning and Predictioncited by 5
  10. 2025K-Dense Analyst: Towards Fully Automated Scientific Analysiscited by 5
  11. 2026MolecularIQ: Characterizing Chemical Reasoning Capabilities Through Symbolic Verification on Molecular Graphscited by 5
  12. 2025BioMol-MQA: A Multi-Modal Question Answering Dataset For LLM Reasoning Over Bio-Molecular Interactionscited by 4
28 more
  1. 2025OwkinZero: Accelerating Biological Discovery with AIcited by 4
  2. 2025MADD: Multi-Agent Drug Discovery Orchestracited by 4
  3. 2025Exploring Modularity of Agentic Systems for Drug Discoverycited by 3
  4. 2025Breaking Bad Molecules: Are MLLMs Ready for Structure-Level Molecular Detoxification?cited by 2
  5. 2026Progressive Multi-Agent Reasoning for Biological Perturbation Predictioncited by 2
  6. 2026MedPRMBench: A Fine-grained Benchmark for Process Reward Models in Medical Reasoningcited by 2
  7. 2025Conditional Chemical Language Models are Versatile Tools in Drug Discoverycited by 1
  8. 2026Can Decision Trees Teach Large Language Models? Distilling Verbalized Knowledge for Molecular Property Predictioncited by 1
  9. 2026From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistrycited by 1
  10. 2025Cognitive Loop via In-Situ Optimization: Self-Adaptive Reasoning for Sciencecited by 0
  11. 2025Learning to Align Molecules and Proteins: A Geometry-Aware Approach to Binding Affinitycited by 0
  12. 2025BioVERSE: Representation Alignment of Biomedical Modalities to LLMs for Multi-Modal Reasoningcited by 0
  13. 2025DiscoVerse: Multi-Agent Pharmaceutical Co-Scientist for Traceable Drug Discovery and Reverse Translationcited by 0
  14. 2026MMAI Gym for Science: Training Liquid Foundation Models for Drug Discoverycited by 0
  15. 2026DC-W2S: Dual-Consensus Weak-to-Strong Training for Reliable Process Reward Modeling in Biological Reasoningcited by 0
  16. 2026A Multitask Large Reasoning Model for Molecular Sciencecited by 0
  17. 2026Protein Design with Agent Rosetta: A Case Study for Specialized Scientific Agentscited by 0
  18. 2026The limits of bio-molecular modeling with large language models : a cross-scale evaluationcited by 0
  19. 2026Bolek: A Multimodal Language Model for Molecular Reasoningcited by 0
  20. 2026OmicsLM: A Multimodal Large Language Model for Multi-Sample Omics Reasoningcited by 0
  21. 2026MolDeTox: Evaluating Language Model's Stepwise Fragment Editing for Molecular Detoxificationcited by 0
  22. 2026LipoAgent: Coordinating Fine-Tuned LLM Agents for Safer Lipid Designcited by 0
  23. 2026SurgiQ: A Large-Scale Multi-Domain Benchmark for Evaluating Surgical Understanding in Large Language Modelscited by 0
  24. 2026TheBioCollection: Unified Pre-Training Scale LLM Corpus for Biologycited by 0
  25. 2026Divergence Decoding: Training-Free Capability Fusioncited by 0
  26. 2026Evaluating Agentic Bioinformatics through Function, Evidence, and Validationcited by 0
  27. 2026Knowledge Acquisition During Pre-training? Large Language Models Learn Better With Auxiliary Viewscited by 0
  28. 2026GenoMorph: Pathway-Grounded Genomic Disease Reasoning via Adaptive Latent Computationcited by 0

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