mlsanityData to 14 Oct 2026

Towards Affordable Tumor Segmentation and Visualization for 3D Breast MRI Using SAM2

arXiv 2507.23272 ↗First posted 31 Jul 2025cs.CV cs.AIcited by 0

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Abstract (arXiv)

Breast MRI provides high-resolution volumetric imaging critical for tumor assessment and treatment planning, yet manual interpretation of 3D scans remains labor-intensive and subjective. While AI-powered tools hold promise for accelerating medical image analysis, adoption of commercial medical AI products remains limited in low- and middle-income countries due to high license costs, proprietary software, and infrastructure demands. In this work, we investigate whether the Segment Anything Model 2 (SAM2) can be adapted for low-cost, minimal-input 3D tumor segmentation in breast MRI. Using a single bounding box annotation on one slice, we propagate segmentation predictions across the 3D volume using three different slice-wise tracking strategies: top-to-bottom, bottom-to-top, and center-outward. We evaluate these strategies across a large cohort of patients and find that center-outward propagation yields the most consistent and accurate segmentations. Despite being a zero-shot model not trained for volumetric medical data, SAM2 achieves strong segmentation performance under minimal supervision. We further analyze how segmentation performance relates to tumor size, location, and shape, identifying key failure modes. Our results suggest that general-purpose foundation models such as SAM2 can support 3D medical image analysis with minimal supervision, offering an accessible and affordable alternative for resource-constrained settings.

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References · 15

  1. 2024SAM 2: Segment Anything in Images and Videoscited by 2,863
  2. 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,558
  3. 2021UNETR: Transformers for 3D Medical Image Segmentationcited by 959
  4. 2022XMem: Long-Term Video Object Segmentation with an Atkinson-Shiffrin Memory Modelcited by 439
  5. 2023A Comprehensive Survey on Pretrained Foundation Models: A History from BERT to ChatGPTcited by 368
  6. 2021Pre-Trained Models: Past, Present and Futurecited by 319
  7. 2018nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentationcited by 291
  8. 2024Medical SAM 2: Segment medical images as video via Segment Anything Model 2cited by 154
  9. 2023Foundational Models Defining a New Era in Vision: A Survey and Outlookcited by 110
  10. 2025MedSAM2: Segment Anything in 3D Medical Images and Videoscited by 96
  11. 2024A large-scale multicenter breast cancer DCE-MRI benchmark dataset with expert segmentationscited by 40
  12. 2024The Effect of Intrinsic Dataset Properties on Generalization: Unraveling Learning Differences Between Natural and Medical Imagescited by 13
3 more
  1. 2022The Intrinsic Manifolds of Radiological Images and their Role in Deep Learningcited by 10
  2. 2025Evaluating Visual Explanations of Attention Maps for Transformer-based Medical Imagingcited by 7
  3. 2025Exploring Patient Data Requirements in Training Effective AI Models for MRI-based Breast Cancer Classificationcited by 2

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