mlsanityData to 14 Oct 2026

Knowledge Distillation Framework for Accelerating High-Accuracy Neural Network-Based Molecular Dynamics Simulations

arXiv 2506.15337 ↗First posted 18 Jun 2025cs.LG cond-mat.mtrl-sci physics.comp-phcited by 0

On the map: Knowledge distillation → Graph neural network distillation

Abstract (arXiv)

Neural network potentials (NNPs) offer a powerful alternative to traditional force fields for molecular dynamics (MD) simulations. Accurate and stable MD simulations, crucial for evaluating material properties, require training data encompassing both low-energy stable structures and high-energy structures. Conventional knowledge distillation (KD) methods fine-tune a pre-trained NNP as a teacher model to generate training data for a student model. However, in material-specific models, this fine-tuning process increases energy barriers, making it difficult to create training data containing high-energy structures. To address this, we propose a novel KD framework that leverages a non-fine-tuned, off-the-shelf pre-trained NNP as a teacher. Its gentler energy landscape facilitates the exploration of a wider range of structures, including the high-energy structures crucial for stable MD simulations. Our framework employs a two-stage training process: first, the student NNP is trained with a dataset generated by the off-the-shelf teacher; then, it is fine-tuned with a smaller, high-accuracy density functional theory (DFT) dataset. We demonstrate the effectiveness of our framework by applying it to both organic (polyethylene glycol) and inorganic (L10GeP2S12) materials, achieving comparable or superior accuracy in reproducing physical properties compared to existing methods. Importantly, our method reduces the number of expensive DFT calculations by 10x compared to existing NNP generation methods, without sacrificing accuracy. Furthermore, the resulting student NNP achieves up to 106x speedup in inference compared to the teacher NNP, enabling significantly faster and more efficient MD simulations.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Placed in Graph neural network distillation, one of 12 directions in Knowledge distillation. Builds on 15 of its 52 references that are in the map. First posted on arXiv 18 Jun 2025.

Builds on

15 of 52 references.

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Same direction, newest first

  1. 2023Accelerating Molecular Graph Neural Networks via Knowledge Distillation26 Jun

Other references · 14

  1. 2015Deep Residual Learning for Image Recognitioncited by 52,096
  2. 2014Adam: A Method for Stochastic Optimizationcited by 37,240
  3. 2015Distilling the Knowledge in a Neural Networkcited by 10,324
  4. 2019DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lightercited by 4,307
  5. 2014FitNets: Hints for Thin Deep Netscited by 1,653
  6. 2019TinyBERT: Distilling BERT for Natural Language Understandingcited by 1,167
  7. 2021Equivariant message passing for the prediction of tensorial properties and molecular spectracited by 441
  8. 2020Knowledge Distillation and Student-Teacher Learning for Visual Intelligence: A Review and New Outlookscited by 316
  9. 2020Machine Learning Force Fieldscited by 207
  10. 2017DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamicscited by 79
  11. 2020Compression of Deep Learning Models for Text: A Surveycited by 64
  12. 2024Survey on Knowledge Distillation for Large Language Models: Methods, Evaluation, and Applicationcited by 56
2 more
  1. 2019Distilling Knowledge From a Deep Pose Regressor Networkcited by 34
  2. 2025A practical guide to machine learning interatomic potentials -- Status and futurecited by 26

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  1. 2025Teacher-student training improves accuracy and efficiency of machine learning interatomic potentials
  2. 2025Ensemble Knowledge Distillation for Machine Learning Interatomic Potentials
  3. 2026Mixture of Experts Framework in Machine Learning Interatomic Potentials for Atomistic Simulations
  4. 2022Simulate Time-integrated Coarse-grained Molecular Dynamics with Multi-Scale Graph Networks
  5. 2025Towards Fast, Specialized Machine Learning Force Fields: Distilling Foundation Models via Energy Hessians
  6. 2025On the Connection Between Diffusion Models and Molecular Dynamics
  7. 2026MDAgent2: Large Language Model for Code Generation and Knowledge Q&A in Molecular Dynamics
  8. 2026MatMind: A Structure-Activity Knowledge-Driven Generative Foundation Model for Materials Science