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Ensemble Knowledge Distillation for Machine Learning Interatomic Potentials

arXiv 2503.14293 ↗First posted 18 Mar 2025physics.chem-ph cs.AIcited by 0

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Abstract (arXiv)

The quality of machine learning interatomic potentials (MLIPs) strongly depends on the quantity of training data as well as the quantum chemistry (QC) level of theory used. Datasets generated with high-fidelity QC methods are typically restricted to small molecules and may be missing energy gradients, which make it difficult to train accurate MLIPs. We present an ensemble knowledge distillation (EKD) method to improve MLIP accuracy when trained to energy-only datasets. First, multiple teacher models are trained to QC energies and then generate atomic forces for all configurations in the dataset. Next, the student MLIP is trained to both QC energies and to ensemble-averaged forces generated by the teacher models. We apply this workflow on the ANI-1ccx dataset where the configuration energies computed at the coupled cluster level of theory. The resulting student MLIPs achieve new state-of-the-art accuracy on the COMP6 benchmark and show improved stability for molecular dynamics simulations.

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References · 20

  1. 2015Distilling the Knowledge in a Neural Networkcited by 10,324
  2. 2019DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lightercited by 4,307
  3. 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 708
  4. 2018Born Again Neural Networkscited by 546
  5. 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 474
  6. 2020Towards Understanding Ensemble, Knowledge Distillation and Self-Distillation in Deep Learningcited by 297
  7. 2022Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphscited by 264
  8. 2020Machine Learning Force Fieldscited by 207
  9. 2020Distilling Knowledge from Graph Convolutional Networkscited by 129
  10. 2018Less is more: sampling chemical space with active learningcited by 82
  11. 2023A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systemscited by 68
  12. 2017Hierarchical modeling of molecular energies using a deep neural networkcited by 37
8 more
  1. 2025Towards Fast, Specialized Machine Learning Force Fields: Distilling Foundation Models via Energy Hessianscited by 15
  2. 2024A predictive machine learning force field framework for liquid electrolyte developmentcited by 13
  3. 2020Automated discovery of a robust interatomic potential for aluminumcited by 11
  4. 2023Data efficiency and extrapolation trends in neural network interatomic potentialscited by 10
  5. 2024Scalable Training of Trustworthy and Energy-Efficient Predictive Graph Foundation Models for Atomistic Materials Modeling: A Case Study with HydraGNNcited by 8
  6. 2023Synthetic pre-training for neural-network interatomic potentialscited by 6
  7. 2022Synthetic data enable experiments in atomistic machine learningcited by 3
  8. 2025Teacher-student training improves accuracy and efficiency of machine learning interatomic potentialscited by 1

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  1. 2025Automated Machine Learning Pipeline: Large Language Models-Assisted Automated Dataset Generation for Training Machine-Learned Interatomic Potentials
  2. 2026Mixture of Experts Framework in Machine Learning Interatomic Potentials for Atomistic Simulations
  3. 2026Mixture of experts architectures for machine learning interatomic potentials
  4. 2026Breaking the Training Barrier of Billion-Parameter Universal Machine Learning Interatomic Potentials
  5. 2025Knowledge Distillation Framework for Accelerating High-Accuracy Neural Network-Based Molecular Dynamics Simulations
  6. 2026MLIPilot: LLM-Driven Auto-Research for Machine-Learned Interatomic Potentials
  7. 2026Physics-Aligned Electronic Ground-State Learning Improves Generalization
  8. 2022Ab-initio quantum chemistry with neural-network wavefunctions