mlsanityData to 14 Oct 2026

Scalable Training of Trustworthy and Energy-Efficient Predictive Graph Foundation Models for Atomistic Materials Modeling: A Case Study with HydraGNN

arXiv 2406.12909 ↗First posted 12 Jun 2024cs.LG physics.comp-phcited by 8

Not on the map. Why?

Abstract (arXiv)

We present our work on developing and training scalable, trustworthy, and energy-efficient predictive graph foundation models (GFMs) using HydraGNN, a multi-headed graph convolutional neural network architecture. HydraGNN expands the boundaries of graph neural network (GNN) computations in both training scale and data diversity. It abstracts over message passing algorithms, allowing both reproduction of and comparison across algorithmic innovations that define nearest-neighbor convolution in GNNs. This work discusses a series of optimizations that have allowed scaling up the GFMs training to tens of thousands of GPUs on datasets consisting of hundreds of millions of graphs. Our GFMs use multi-task learning (MTL) to simultaneously learn graph-level and node-level properties of atomistic structures, such as energy and atomic forces. Using over 154 million atomistic structures for training, we illustrate the performance of our approach along with the lessons learned on two state-of-the-art United States Department of Energy (US-DOE) supercomputers, namely the Perlmutter petascale system at the National Energy Research Scientific Computing Center and the Frontier exascale system at Oak Ridge Leadership Computing Facility. The HydraGNN architecture enables the GFM to achieve near-linear strong scaling performance using more than 2,000 GPUs on Perlmutter and 16,000 GPUs on Frontier.

Key facts. Cited by 8 papers in the map (data through 14 Oct 2026). Builds on 41 of its 101 references that are in the map. First posted on arXiv 12 Jun 2024.

Builds on

41 of 101 references.

References · 41

  1. 2017Attention Is All You Needcited by 60,361
  2. 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,399
  3. 2020Language Models are Few-Shot Learnerscited by 32,419
  4. 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
  5. 2019Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformercited by 14,599
  6. 2019RoBERTa: A Robustly Optimized BERT Pretraining Approachcited by 13,372
  7. 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,434
  8. 2017Accurate, Large Minibatch SGD: Training ImageNet in 1 Hourcited by 1,492
  9. 2019SciBERT: A Pretrained Language Model for Scientific Textcited by 1,414
  10. 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 708
  11. 2017SchNet: A continuous-filter convolutional neural network for modeling quantum interactionscited by 571
  12. 2020ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Predictioncited by 337
29 more
  1. 2020The Open Catalyst 2020 (OC20) Dataset and Community Challengescited by 246
  2. 2020Hyper-Parameter Optimization: A Review of Algorithms and Applicationscited by 114
  3. 2015Batch Bayesian Optimization via Local Penalizationcited by 104
  4. 2022The Open Catalyst 2022 (OC22) Dataset and Challenges for Oxide Electrocatalystscited by 95
  5. 2020PyTorch Distributed: Experiences on Accelerating Data Parallel Trainingcited by 90
  6. 2021ClimateBert: A Pretrained Language Model for Climate-Related Textcited by 90
  7. 2024Position: Graph Foundation Models are Already Herecited by 86
  8. 2021MatSciBERT: A Materials Domain Language Model for Text Mining and Information Extractioncited by 83
  9. 2024Scientific Large Language Models: A Survey on Biological & Chemical Domainscited by 80
  10. 2023Uncertainty Quantification over Graph with Conformalized Graph Neural Networkscited by 79
  11. 2016By-passing the Kohn-Sham equations with machine learningcited by 67
  12. 2020Uncertainty Quantification Using Neural Networks for Molecular Property Predictioncited by 66
  13. 2021DistGNN: Scalable Distributed Training for Large-Scale Graph Neural Networkscited by 59
  14. 2022polyBERT: A chemical language model to enable fully machine-driven ultrafast polymer informaticscited by 48
  15. 2023Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasetscited by 39
  16. 2021DGL-LifeSci: An Open-Source Toolkit for Deep Learning on Graphs in Life Sciencecited by 38
  17. 2024On the Scalability of GNNs for Molecular Graphscited by 36
  18. 2021AutoDEUQ: Automated Deep Ensemble with Uncertainty Quantificationcited by 31
  19. 2023Scaling Laws for Hyperparameter Optimizationcited by 16
  20. 2022The Open MatSci ML Toolkit: A Flexible Framework for Machine Learning in Materials Sciencecited by 14
  21. 2023MatSciML: A Broad, Multi-Task Benchmark for Solid-State Materials Modelingcited by 14
  22. 2022SsciBERT: A Pre-trained Language Model for Social Science Textscited by 12
  23. 2023Tune As You Scale: Hyperparameter Optimization For Compute Efficient Trainingcited by 9
  24. 2021MuyGPs: Scalable Gaussian Process Hyperparameter Estimation Using Local Cross-Validationcited by 8
  25. 2022Multi-task graph neural networks for simultaneous prediction of global and atomic properties in ferromagnetic systemscited by 6
  26. 2024The Unreasonable Effectiveness Of Early Discarding After One Epoch In Neural Network Hyperparameter Optimizationcited by 5
  27. 2023Transfer learning for atomistic simulations using GNNs and kernel mean embeddingscited by 4
  28. 2022OpenGlue: Open Source Graph Neural Net Based Pipeline for Image Matchingcited by 3
  29. 2022Scalable training of graph convolutional neural networks for fast and accurate predictions of HOMO-LUMO gap in moleculescited by 3

Built on by

Cited by year (2026 to 14 Oct)

Citing papers per year: 2025: 5; 2026: 3.

8 papers.