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Bayesian Optimization for General Reaction Conditions

arXiv 2502.18966 ↗First posted 26 Feb 2025cs.LGcited by 0

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Abstract (arXiv)

General chemical reaction conditions that achieve consistently high performance across multiple substrates are important for practical applications such as library synthesis and high-throughput experimentation. However, identifying such conditions efficiently has been a longstanding challenge, as it requires decision making under uncertainty with respect to both conditions and substrates, while minimizing the number of required experiments. Here, we introduce CurryBO, a high-level framework for generality-oriented optimization. By formalizing the problem as Bayesian optimization over curried functions, CurryBO provides a unified framework that accommodates different generality definitions (e.g., mean yield across substrates), and supports a range of substrate and condition selection strategies. We evaluate this framework on four benchmark tasks in experimental reaction optimization, and systematically analyze key algorithmic components. Our results show that efficient experiment planning can be achieved by emphasizing exploration when selecting reaction conditions, followed by the uncertainty-guided prioritization of substrates in a sequential decison-making scheme. Based on these insights, we design and validate an optimization policy that substantially improves sample efficiency relative to previously reported approaches across all benchmarks. Overall, the flexibility and modularity of CurryBO facilitate the integration of generality-oriented optimization into experimental settings, enabling more efficient identification of solutions that perform robustly across diverse tasks.

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17 of 67 references.

References · 17

  1. 2018GPyTorch: Blackbox Matrix-Matrix Gaussian Process Inference with GPU Accelerationcited by 609
  2. 2017Parallel and Distributed Thompson Sampling for Large-scale Accelerated Exploration of Chemical Spacecited by 76
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  5. 2023A Study of Bayesian Neural Network Surrogates for Bayesian Optimizationcited by 50
  6. 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?cited by 48
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  11. 2018Bayesian Optimization with Expensive Integrandscited by 24
  12. 2019Exploration by Optimisation in Partial Monitoringcited by 21
5 more
  1. 2018Cleaning up the neighborhood: A full classification for adversarial partial monitoringcited by 16
  2. 2022Distributionally Robust Bayesian Optimization with varphi-divergencescited by 16
  3. 2020Distributionally Robust Bayesian Quadrature Optimizationcited by 15
  4. 2023Linear Partial Monitoring for Sequential Decision-Making: Algorithms, Regret Bounds and Applicationscited by 12
  5. 2023Promises and Pitfalls of the Linearized Laplace in Bayesian Optimizationcited by 10

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