mlsanityData to 14 Oct 2026

Physical Consistency Bridges Heterogeneous Data in Molecular Multi-Task Learning

arXiv 2410.10118 ↗First posted 14 Oct 2024cs.LG physics.chem-phcited by 3

Not on the map. Why?

Abstract (arXiv)

In recent years, machine learning has demonstrated impressive capability in handling molecular science tasks. To support various molecular properties at scale, machine learning models are trained in the multi-task learning paradigm. Nevertheless, data of different molecular properties are often not aligned: some quantities, e.g. equilibrium structure, demand more cost to compute than others, e.g. energy, so their data are often generated by cheaper computational methods at the cost of lower accuracy, which cannot be directly overcome through multi-task learning. Moreover, it is not straightforward to leverage abundant data of other tasks to benefit a particular task. To handle such data heterogeneity challenges, we exploit the specialty of molecular tasks that there are physical laws connecting them, and design consistency training approaches that allow different tasks to exchange information directly so as to improve one another. Particularly, we demonstrate that the more accurate energy data can improve the accuracy of structure prediction. We also find that consistency training can directly leverage force and off-equilibrium structure data to improve structure prediction, demonstrating a broad capability for integrating heterogeneous data.

Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Builds on 41 of its 68 references that are in the map. First posted on arXiv 14 Oct 2024.

Builds on

41 of 68 references.

References · 41

  1. 2020Denoising Diffusion Probabilistic Modelscited by 21,076
  2. 2020Denoising Diffusion Implicit Modelscited by 9,781
  3. 2020Score-Based Generative Modeling through Stochastic Differential Equationscited by 9,122
  4. 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,058
  5. 2015Variational Inference with Normalizing Flowscited by 2,170
  6. 2021Variational Diffusion Modelscited by 1,153
  7. 2016Automatic chemical design using a data-driven continuous representation of moleculescited by 765
  8. 2022Equivariant Diffusion for Molecule Generation in 3Dcited by 677
  9. 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generationcited by 516
  10. 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 474
  11. 2021Equivariant message passing for the prediction of tensorial properties and molecular spectracited by 441
  12. 2021GemNet: Universal Directional Graph Neural Networks for Moleculescited by 343
29 more
  1. 2021OGB-LSC: A Large-Scale Challenge for Machine Learning on Graphscited by 329
  2. 2020Learning from Protein Structure with Geometric Vector Perceptronscited by 313
  3. 2022Torsional Diffusion for Molecular Conformer Generationcited by 263
  4. 2022Learning Local Equivariant Representations for Large-Scale Atomistic Dynamicscited by 256
  5. 2020Equivariant Flows: Exact Likelihood Generative Learning for Symmetric Densitiescited by 250
  6. 2023SE(3) diffusion model with application to protein backbone generationcited by 219
  7. 2017Deep Potential Molecular Dynamics: a scalable model with the accuracy of quantum mechanicscited by 214
  8. 2021Learning Gradient Fields for Molecular Conformation Generationcited by 163
  9. 2023Denoising Diffusion Samplerscited by 149
  10. 2022An optimal control perspective on diffusion-based generative modelingcited by 147
  11. 2022Flow Annealed Importance Sampling Bootstrapcited by 127
  12. 2022Pre-training via Denoising for Molecular Property Predictioncited by 124
  13. 2024Iterated Denoising Energy Matching for Sampling from Boltzmann Densitiescited by 116
  14. 2016A Variational Perspective on Accelerated Methods in Optimizationcited by 110
  15. 2021GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensemblescited by 107
  16. 2021Learning Neural Generative Dynamics for Molecular Conformation Generationcited by 88
  17. 2022SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentialscited by 82
  18. 2022One Transformer Can Understand Both 2D & 3D Molecular Datacited by 77
  19. 2019A Generative Model for Molecular Distance Geometrycited by 73
  20. 2023Two for One: Diffusion Models and Force Fields for Coarse-Grained Molecular Dynamicscited by 72
  21. 2023Diffusion Models as Masked Autoencoderscited by 71
  22. 2022Benchmarking Graphormer on Large-Scale Molecular Modeling Datasetscited by 64
  23. 2023Consistent Diffusion Models: Mitigating Sampling Drift by Learning to be Consistentcited by 58
  24. 2022Direct Molecular Conformation Generationcited by 30
  25. 2023Overcoming the Barrier of Orbital-Free Density Functional Theory for Molecular Systems Using Deep Learningcited by 13
  26. 2023PubChemQC B3LYP/6-31G*//PM6 dataset: the Electronic Structures of 86 Million Molecules using B3LYP/6-31G* calculationscited by 12
  27. 2024Self-Consistency Training for Density-Functional-Theory Hamiltonian Predictioncited by 12
  28. 2023KineticNet: Deep learning a transferable kinetic energy functional for orbital-free density functional theorycited by 7
  29. 2024GeoMFormer: A General Architecture for Geometric Molecular Representation Learningcited by 6

Built on by

Cited by year

Citing papers per year: 2024: 1; 2025: 2.

3 papers.