Beyond Fine-tuning: Unleashing the Potential of Continuous Pretraining for Clinical LLMs
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Abstract (arXiv)
Large Language Models (LLMs) have demonstrated significant potential in transforming clinical applications. In this study, we investigate the efficacy of four techniques in adapting LLMs for clinical use-cases: continuous pretraining, instruct fine-tuning, NEFTune, and prompt engineering. We employ these methods on Mistral 7B and Mixtral 8x7B models, leveraging a large-scale clinical pretraining dataset of 50 billion tokens and an instruct fine-tuning dataset of 500 million tokens. Our evaluation across various clinical tasks reveals the impact of each technique. While continuous pretraining beyond 250 billion tokens yields marginal improvements on its own, it establishes a strong foundation for instruct fine-tuning. Notably, NEFTune, designed primarily to enhance generation quality, surprisingly demonstrates additional gains on our benchmark. Complex prompt engineering methods further enhance performance. These findings show the importance of tailoring fine-tuning strategies and exploring innovative techniques to optimize LLM performance in the clinical domain.
Key facts. Cited by 8 papers in the map (data through 13 Oct 2026). Builds on 29 of its 44 references that are in the map. First posted on arXiv 23 Sep 2024.
Builds on
29 of 44 references.
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17 more
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Built on by
Citing papers per year: 2025: 2; 2026: 6.
8 papers.
- 2025A Modular Approach for Clinical SLMs Driven by Synthetic Data with Pre-Instruction Tuning, Model Merging, and Clinical-Tasks Alignmentcited by 20
- 2025Format Inertia: A Failure Mechanism of LLMs in Medical Pre-Consultationcited by 1
- 2026MedInjection-FR: Exploring the Role of Native, Synthetic, and Translated Data in Biomedical Instruction Tuningcited by 1
- 2026DKL: Decoupled Knowledge Learning for Instruction-Tuned Language Modelscited by 1
- 2026Trade-offs in Medical LLM Adaptation: An Empirical Study in French QAcited by 0
- 2026KItCAT: Knowledge Injection via Input Corruption for Auto-regressive Trainingcited by 0
- 2026Didactic knowledge or Clinical Cases? How Data Types Shape Medical Large Language Modelscited by 0
- 2026Localization Lens for Improving Medical Vision-Language Modelscited by 0
- 2026Localization Lens for Improving Medical Vision-Language Models3 Oct 2026
- 2026DKL: Decoupled Knowledge Learning for Instruction-Tuned Language Models2 Sep 2026
- 2026KItCAT: Knowledge Injection via Input Corruption for Auto-regressive Training31 Aug 2026
- 2026Didactic knowledge or Clinical Cases? How Data Types Shape Medical Large Language Models26 Aug 2026
- 2026Trade-offs in Medical LLM Adaptation: An Empirical Study in French QA17 Jun 2026
- 2026MedInjection-FR: Exploring the Role of Native, Synthetic, and Translated Data in Biomedical Instruction Tuning6 Mar 2026
- 2025Format Inertia: A Failure Mechanism of LLMs in Medical Pre-Consultation2 Oct 2025
- 2025A Modular Approach for Clinical SLMs Driven by Synthetic Data with Pre-Instruction Tuning, Model Merging, and Clinical-Tasks Alignment15 May 2025