mlsanityData to 7 Oct 2026

CHIME: LLM-Assisted Hierarchical Organization of Scientific Studies for Literature Review Support

arXiv 2407.16148 ↗First posted 23 Jul 2024cs.CLcited by 28

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Abstract (arXiv)

Literature review requires researchers to synthesize a large amount of information and is increasingly challenging as the scientific literature expands. In this work, we investigate the potential of LLMs for producing hierarchical organizations of scientific studies to assist researchers with literature review. We define hierarchical organizations as tree structures where nodes refer to topical categories and every node is linked to the studies assigned to that category. Our naive LLM-based pipeline for hierarchy generation from a set of studies produces promising yet imperfect hierarchies, motivating us to collect CHIME, an expert-curated dataset for this task focused on biomedicine. Given the challenging and time-consuming nature of building hierarchies from scratch, we use a human-in-the-loop process in which experts correct errors (both links between categories and study assignment) in LLM-generated hierarchies. CHIME contains 2,174 LLM-generated hierarchies covering 472 topics, and expert-corrected hierarchies for a subset of 100 topics. Expert corrections allow us to quantify LLM performance, and we find that while they are quite good at generating and organizing categories, their assignment of studies to categories could be improved. We attempt to train a corrector model with human feedback which improves study assignment by 12.6 F1 points. We release our dataset and models to encourage research on developing better assistive tools for literature review.

Key facts. Cited by 28 papers in the map (data through 7 Oct 2026). Builds on 17 of its 41 references that are in the map. First posted on arXiv 23 Jul 2024.

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17 of 41 references.

References · 17

  1. 2022Large Language Models are Zero-Shot Reasonerscited by 4,323
  2. 2023Lost in the Middle: How Language Models Use Long Contextscited by 3,383
  3. 2019HuggingFace's Transformers: State-of-the-art Natural Language Processingcited by 2,201
  4. 2019ScispaCy: Fast and Robust Models for Biomedical Natural Language Processingcited by 244
  5. 2022SciRepEval: A Multi-Format Benchmark for Scientific Document Representationscited by 124
  6. 2024MARG: Multi-Agent Review Generation for Scientific Paperscited by 98
  7. 2021MS2: Multi-Document Summarization of Medical Studiescited by 80
  8. 2023Large Language Models Enable Few-Shot Clusteringcited by 72
  9. 2023ClusterLLM: Large Language Models as a Guide for Text Clusteringcited by 69
  10. 2023Goal-Driven Explainable Clustering via Language Descriptionscited by 58
  11. 2020Generating (Factual?) Narrative Summaries of RCTs: Experiments with Neural Multi-Document Summarizationcited by 52
  12. 2020Explaining Relationships Between Scientific Documentscited by 35
5 more
  1. 2023Appraising the Potential Uses and Harms of LLMs for Medical Systematic Reviewscited by 18
  2. 2023Generating a Structured Summary of Numerous Academic Papers: Dataset and Methodcited by 16
  3. 2022Multi-Document Scientific Summarization from a Knowledge Graph-Centric Viewcited by 11
  4. 2023Hierarchical Catalogue Generation for Literature Review: A Benchmarkcited by 11
  5. 2021Towards Generating Citation Sentences for Multiple References with Intent Controlcited by 9

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2024: 3; 2025: 13; 2026: 12.

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  1. 2024Many Heads Are Better Than One: Improved Scientific Idea Generation by A LLM-Based Multi-Agent Systemcited by 63
  2. 2024LLMs as Research Tools: A Large Scale Survey of Researchers' Usage and Perceptionscited by 45
  3. 2024Large Language Models for Automated Literature Review: An Evaluation of Reference Generation, Abstract Writing, and Review Compositioncited by 15
  4. 2025How Far Are AI Scientists from Changing the World?cited by 15
  5. 2025Evolving Roles of LLMs in Scientific Innovation: Assistant, Collaborator, Scientist, and Evaluatorcited by 9
  6. 2025Context-Aware Hierarchical Taxonomy Generation for Scientific Papers via LLM-Guided Multi-Aspect Clusteringcited by 9
  7. 2025From Hypothesis to Publication: A Comprehensive Survey of AI-Driven Research Support Systemscited by 8
  8. 2025Whose Name Comes Up? Auditing LLM-Based Scholar Recommendationscited by 5
  9. 2025Intent-Aware Schema Generation And Refinement For Literature Review Tablescited by 5
  10. 2025Deep Ideation: Designing LLM Agents to Generate Novel Research Ideas on Scientific Concept Networkcited by 5
  11. 2026Repository Intelligence Graph: Deterministic Architectural Map for LLM Code Assistantscited by 4
  12. 2025ScienceMeter: Tracking Scientific Knowledge Updates in Language Modelscited by 3
16 more
  1. 2025Attribution Gradients: Incrementally Unfolding Citations for Critical Examination of Attributed AI Answerscited by 3
  2. 2025ResearchPulse: Building Method-Experiment Chains through Multi-Document Scientific Inferencecited by 2
  3. 2026Agent Benchmarks Fail Public Sector Requirementscited by 2
  4. 2026EvoTaxo: Building and Evolving Taxonomy from Social Media Streamscited by 1
  5. 2025Accelerating Antibiotic Discovery with Large Language Models and Knowledge Graphscited by 0
  6. 2025LLM as Attention-Informed NTM and Topic Modeling as long-input Generation: Interpretability and long-Context Capabilitycited by 0
  7. 2025Leveraging Hierarchical Organization for Medical Multi-document Summarizationcited by 0
  8. 2026MVSS: A Unified Framework for Multi-View Structured Survey Generationcited by 0
  9. 2026PROMPT2BOX:Improving LLM Weakness Discovery and Specificity Estimation by Uncovering Entailment Structure among Promptscited by 0
  10. 2026CoAuthorAI: A Human in the Loop System For Scientific Book Writingcited by 0
  11. 2026SC-Taxo: Hierarchical Taxonomy Generation under Semantic Consistency Constraints using Large Language Modelscited by 0
  12. 2026LLM Jaggedness Unlocks Scientific Creativitycited by 0
  13. 2026How Much Structure Do LLMs Need? Evaluating LLMs for Bibliometric Cluster Descriptioncited by 0
  14. 2026Security and Privacy Taxonomy Generation from Mobile App Reviewscited by 0
  15. 2026LLMs for Academic Workflows: An Evaluation of Literature Reviews Generated with Short and Long Context Windows of LLMscited by 0
  16. 2026AgentFold: Closed-Loop Agentic Search for Protein Folding Model Designcited by 0