mlsanityData to 14 Oct 2026

Contrastive Dual-Interaction Graph Neural Network for Molecular Property Prediction

arXiv 2405.02628 ↗First posted 4 May 2024cs.LG cs.AIcited by 0

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Abstract (arXiv)

Molecular property prediction is a key component of AI-driven drug discovery and molecular characterization learning. Despite recent advances, existing methods still face challenges such as limited ability to generalize, and inadequate representation of learning from unlabeled data, especially for tasks specific to molecular structures. To address these limitations, we introduce DIG-Mol, a novel self-supervised graph neural network framework for molecular property prediction. This architecture leverages the power of contrast learning with dual interaction mechanisms and unique molecular graph enhancement strategies. DIG-Mol integrates a momentum distillation network with two interconnected networks to efficiently improve molecular characterization. The framework's ability to extract key information about molecular structure and higher-order semantics is supported by minimizing loss of contrast. We have established DIG-Mol's state-of-the-art performance through extensive experimental evaluation in a variety of molecular property prediction tasks. In addition to demonstrating superior transferability in a small number of learning scenarios, our visualizations highlight DIG-Mol's enhanced interpretability and representation capabilities. These findings confirm the effectiveness of our approach in overcoming challenges faced by traditional methods and mark a significant advance in molecular property prediction.

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References · 16

  1. 2020Supervised Contrastive Learningcited by 2,829
  2. 2020Graph Contrastive Learning with Augmentationscited by 1,208
  3. 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,051
  4. 2019Strategies for Pre-training Graph Neural Networkscited by 971
  5. 2019Graph WaveNet for Deep Spatial-Temporal Graph Modelingcited by 829
  6. 2019Analyzing Learned Molecular Representations for Property Predictioncited by 375
  7. 2018GuacaMol: Benchmarking Models for De Novo Molecular Designcited by 297
  8. 2016Molecular Graph Convolutions: Moving Beyond Fingerprintscited by 238
  9. 2018N-Gram Graph: Simple Unsupervised Representation for Graphs, with Applications to Moleculescited by 93
  10. 2021Few-Shot Graph Learning for Molecular Property Predictioncited by 81
  11. 2019Molecular Property Prediction: A Multilevel Quantum Interactions Modeling Perspectivecited by 73
  12. 2021Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learningcited by 70
4 more
  1. 2021GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Predictioncited by 61
  2. 2021Molecular Contrastive Learning with Chemical Element Knowledge Graphcited by 50
  3. 2022Attention-wise masked graph contrastive learning for predicting molecular propertycited by 10
  4. 2020Relation-weighted Link Prediction for Disease Gene Identificationcited by 2

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