Preconditioned Neural Posterior Estimation for Likelihood-free Inference
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Abstract (arXiv)
Simulation based inference (SBI) methods enable the estimation of posterior distributions when the likelihood function is intractable, but where model simulation is feasible. Popular neural approaches to SBI are the neural posterior estimator (NPE) and its sequential version (SNPE). These methods can outperform statistical SBI approaches such as approximate Bayesian computation (ABC), particularly for relatively small numbers of model simulations. However, we show in this paper that the NPE methods are not guaranteed to be highly accurate, even on problems with low dimension. In such settings the posterior cannot be accurately trained over the prior predictive space, and even the sequential extension remains sub-optimal. To overcome this, we propose preconditioned NPE (PNPE) and its sequential version (PSNPE), which uses a short run of ABC to effectively eliminate regions of parameter space that produce large discrepancy between simulations and data and allow the posterior emulator to be more accurately trained. We present comprehensive empirical evidence that this melding of neural and statistical SBI methods improves performance over a range of examples, including a motivating example involving a complex agent-based model applied to real tumour growth data.
Key facts. Cited by 6 papers in the map (data through 7 Oct 2026). Builds on 31 of its 64 references that are in the map. First posted on arXiv 21 Apr 2024.
Builds on
31 of 64 references.
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19 more
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Citing papers per year: 2024: 2; 2025: 2; 2026: 2.
6 papers.
- 2025Does Unsupervised Domain Adaptation Improve the Robustness of Amortized Bayesian Inference? A Systematic Evaluationcited by 10
- 2025Simulation-based Bayesian inference under model misspecificationcited by 9
- 2024Domain-Adaptive Neural Posterior Estimation for Strong Gravitational Lens Analysiscited by 7
- 2024A Comprehensive Guide to Simulation-based Inference in Computational Biologycited by 5
- 2026Preconditioned Robust Neural Posterior Estimation for Misspecified Simulatorscited by 0
- 2026Identifiability and amortized inference limitations in Kuramoto modelscited by 0
- 2026Identifiability and amortized inference limitations in Kuramoto models23 Mar 2026
- 2026Preconditioned Robust Neural Posterior Estimation for Misspecified Simulators20 Feb 2026
- 2025Simulation-based Bayesian inference under model misspecification16 Mar 2025
- 2025Does Unsupervised Domain Adaptation Improve the Robustness of Amortized Bayesian Inference? A Systematic Evaluation7 Feb 2025
- 2024Domain-Adaptive Neural Posterior Estimation for Strong Gravitational Lens Analysis21 Oct 2024
- 2024A Comprehensive Guide to Simulation-based Inference in Computational Biology29 Sep 2024