How far is Language Model from 100% Few-shot Named Entity Recognition in Medical Domain
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Abstract (arXiv)
Recent advancements in language models (LMs) have led to the emergence of powerful models such as Small LMs (e.g., T5) and Large LMs (e.g., GPT-4). These models have demonstrated exceptional capabilities across a wide range of tasks, such as name entity recognition (NER) in the general domain. (We define SLMs as pre-trained models with fewer parameters compared to models like GPT-3/3.5/4, such as T5, BERT, and others.) Nevertheless, their efficacy in the medical section remains uncertain and the performance of medical NER always needs high accuracy because of the particularity of the field. This paper aims to provide a thorough investigation to compare the performance of LMs in medical few-shot NER and answer How far is LMs from 100% Few-shot NER in Medical Domain, and moreover to explore an effective entity recognizer to help improve the NER performance. Based on our extensive experiments conducted on 16 NER models spanning from 2018 to 2023, our findings clearly indicate that LLMs outperform SLMs in few-shot medical NER tasks, given the presence of suitable examples and appropriate logical frameworks. Despite the overall superiority of LLMs in few-shot medical NER tasks, it is important to note that they still encounter some challenges, such as misidentification, wrong template prediction, etc. Building on previous findings, we introduce a simple and effective method called textscRT (Retrieving and Thinking), which serves as retrievers, finding relevant examples, and as thinkers, employing a step-by-step reasoning process. Experimental results show that our proposed textscRT framework significantly outperforms the strong open baselines on the two open medical benchmark datasets
Key facts. Cited by 14 papers in the map (data through 14 Oct 2026). Builds on 24 of its 33 references that are in the map. First posted on arXiv 1 Jul 2023.
Builds on
24 of 33 references.
References · 24
- 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,399
- 2022Chain-of-Thought Prompting Elicits Reasoning in Large Language Modelscited by 12,459
- 2023Tree of Thoughts: Deliberate Problem Solving with Large Language Modelscited by 3,211
- 2017Prototypical Networks for Few-shot Learningcited by 3,015
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,947
- 2022Rethinking the Role of Demonstrations: What Makes In-Context Learning Work?cited by 1,434
- 2019ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmissioncited by 493
- 2022GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Recordscited by 238
- 2023Large Language Model Is Not a Good Few-shot Information Extractor, but a Good Reranker for Hard Samples!cited by 119
- 2020Few-shot Slot Tagging with Collapsed Dependency Transfer and Label-enhanced Task-adaptive Projection Networkcited by 83
- 2018Few-shot classification in Named Entity Recognition Taskcited by 64
- 2021CONTaiNER: Few-Shot Named Entity Recognition via Contrastive Learningcited by 64
12 more
- 2023PromptNER: Prompting For Named Entity Recognitioncited by 35
- 2020Drug Repurposing for COVID-19 via Knowledge Graph Completioncited by 30
- 2019Label-Agnostic Sequence Labeling by Copying Nearest Neighborscited by 27
- 2022Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learningcited by 24
- 2022Few-shot Named Entity Recognition with Entity-level Prototypical Network Enhanced by Dispersedly Distributed Prototypescited by 17
- 2022QaNER: Prompting Question Answering Models for Few-shot Named Entity Recognitioncited by 15
- 2022Semantic Structure based Query Graph Prediction for Question Answering over Knowledge Graphcited by 9
- 2022A Hierarchical N-Gram Framework for Zero-Shot Link Predictioncited by 9
- 2023Understand the Dynamic World: An End-to-End Knowledge Informed Framework for Open Domain Entity State Trackingcited by 9
- 2023Learning In-context Learning for Named Entity Recognitioncited by 7
- 2020Multi-Fusion Chinese WordNet (MCW) : Compound of Machine Learning and Manual Correctioncited by 4
- 2023W-procer: Weighted Prototypical Contrastive Learning for Medical Few-Shot Named Entity Recognitioncited by 4
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Citing papers per year: 2023: 3; 2024: 8; 2025: 3.
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- 2024CancerLLM: A Large Language Model in Cancer Domaincited by 12
- 2024DynamicNER: A Dynamic, Multilingual, and Fine-Grained Dataset for LLM-based Named Entity Recognitioncited by 5
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- 2024RaTEScore: A Metric for Radiology Report Generation24 Jun 2024
- 2024CancerLLM: A Large Language Model in Cancer Domain15 Jun 2024
- 2024Synergetic Event Understanding: A Collaborative Approach to Cross-Document Event Coreference Resolution with Large Language Models4 Jun 2024
- 2024Large Language Models Meet NLP: A Survey21 May 2024
- 2024BiomedRAG: A Retrieval Augmented Large Language Model for Biomedicine1 May 2024
- 2024AutoRD: An Automatic and End-to-End System for Rare Disease Knowledge Graph Construction Based on Ontologies-enhanced Large Language Models1 Mar 2024
- 2023Large Language Models for Generative Information Extraction: A Survey29 Dec 2023
- 2023Large Language Models for Generative Information Extraction: A Surveycited by 185
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- 2024RaTEScore: A Metric for Radiology Report Generationcited by 65
- 2024CancerLLM: A Large Language Model in Cancer Domaincited by 12
- 2024DynamicNER: A Dynamic, Multilingual, and Fine-Grained Dataset for LLM-based Named Entity Recognitioncited by 5
- 2024AutoRD: An Automatic and End-to-End System for Rare Disease Knowledge Graph Construction Based on Ontologies-enhanced Large Language Modelscited by 3
- 2024Synergetic Event Understanding: A Collaborative Approach to Cross-Document Event Coreference Resolution with Large Language Modelscited by 3
- 2023Benchingmaking Large Langage Models in Biomedical Triple Extractioncited by 2
- 2023A Review of Reinforcement Learning for Natural Language Processing, and Applications in Healthcarecited by 1
- 2024Evaluating Named Entity Recognition Using Few-Shot Prompting with Large Language Modelscited by 0
- 2025Token and Span Classification for Entity Recognition in French Historical Encyclopediascited by 0
- 2025Named Entity Recognition in COVID-19 tweets with Entity Knowledge Augmentationcited by 0
- 2025Named Entity Recognition in COVID-19 tweets with Entity Knowledge Augmentation5 Oct 2025
- 2025Token and Span Classification for Entity Recognition in French Historical Encyclopedias3 Jun 2025
- 2024DynamicNER: A Dynamic, Multilingual, and Fine-Grained Dataset for LLM-based Named Entity Recognition17 Sep 2024
- 2024Evaluating Named Entity Recognition Using Few-Shot Prompting with Large Language Models28 Aug 2024
- 2024RaTEScore: A Metric for Radiology Report Generation24 Jun 2024
- 2024CancerLLM: A Large Language Model in Cancer Domain15 Jun 2024
- 2024Synergetic Event Understanding: A Collaborative Approach to Cross-Document Event Coreference Resolution with Large Language Models4 Jun 2024
- 2024Large Language Models Meet NLP: A Survey21 May 2024
- 2024AutoRD: An Automatic and End-to-End System for Rare Disease Knowledge Graph Construction Based on Ontologies-enhanced Large Language Models1 Mar 2024
- 2023Large Language Models for Generative Information Extraction: A Survey29 Dec 2023
- 2023Benchingmaking Large Langage Models in Biomedical Triple Extraction27 Oct 2023
- 2023A Review of Reinforcement Learning for Natural Language Processing, and Applications in Healthcare23 Oct 2023
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- 2024Improving Few-Shot Cross-Domain Named Entity Recognition by Instruction Tuning a Word-Embedding based Retrieval Augmented Large Language Model
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