mlsanityData to 14 Oct 2026

How far is Language Model from 100% Few-shot Named Entity Recognition in Medical Domain

arXiv 2307.00186 ↗First posted 1 Jul 2023cs.CLcited by 14

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Abstract (arXiv)

Recent advancements in language models (LMs) have led to the emergence of powerful models such as Small LMs (e.g., T5) and Large LMs (e.g., GPT-4). These models have demonstrated exceptional capabilities across a wide range of tasks, such as name entity recognition (NER) in the general domain. (We define SLMs as pre-trained models with fewer parameters compared to models like GPT-3/3.5/4, such as T5, BERT, and others.) Nevertheless, their efficacy in the medical section remains uncertain and the performance of medical NER always needs high accuracy because of the particularity of the field. This paper aims to provide a thorough investigation to compare the performance of LMs in medical few-shot NER and answer How far is LMs from 100% Few-shot NER in Medical Domain, and moreover to explore an effective entity recognizer to help improve the NER performance. Based on our extensive experiments conducted on 16 NER models spanning from 2018 to 2023, our findings clearly indicate that LLMs outperform SLMs in few-shot medical NER tasks, given the presence of suitable examples and appropriate logical frameworks. Despite the overall superiority of LLMs in few-shot medical NER tasks, it is important to note that they still encounter some challenges, such as misidentification, wrong template prediction, etc. Building on previous findings, we introduce a simple and effective method called textscRT (Retrieving and Thinking), which serves as retrievers, finding relevant examples, and as thinkers, employing a step-by-step reasoning process. Experimental results show that our proposed textscRT framework significantly outperforms the strong open baselines on the two open medical benchmark datasets

Key facts. Cited by 14 papers in the map (data through 14 Oct 2026). Builds on 24 of its 33 references that are in the map. First posted on arXiv 1 Jul 2023.

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24 of 33 references.

References · 24

  1. 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,399
  2. 2022Chain-of-Thought Prompting Elicits Reasoning in Large Language Modelscited by 12,459
  3. 2023Tree of Thoughts: Deliberate Problem Solving with Large Language Modelscited by 3,211
  4. 2017Prototypical Networks for Few-shot Learningcited by 3,015
  5. 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,947
  6. 2022Rethinking the Role of Demonstrations: What Makes In-Context Learning Work?cited by 1,434
  7. 2019ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmissioncited by 493
  8. 2022GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Recordscited by 238
  9. 2023Large Language Model Is Not a Good Few-shot Information Extractor, but a Good Reranker for Hard Samples!cited by 119
  10. 2020Few-shot Slot Tagging with Collapsed Dependency Transfer and Label-enhanced Task-adaptive Projection Networkcited by 83
  11. 2018Few-shot classification in Named Entity Recognition Taskcited by 64
  12. 2021CONTaiNER: Few-Shot Named Entity Recognition via Contrastive Learningcited by 64
12 more
  1. 2023PromptNER: Prompting For Named Entity Recognitioncited by 35
  2. 2020Drug Repurposing for COVID-19 via Knowledge Graph Completioncited by 30
  3. 2019Label-Agnostic Sequence Labeling by Copying Nearest Neighborscited by 27
  4. 2022Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learningcited by 24
  5. 2022Few-shot Named Entity Recognition with Entity-level Prototypical Network Enhanced by Dispersedly Distributed Prototypescited by 17
  6. 2022QaNER: Prompting Question Answering Models for Few-shot Named Entity Recognitioncited by 15
  7. 2022Semantic Structure based Query Graph Prediction for Question Answering over Knowledge Graphcited by 9
  8. 2022A Hierarchical N-Gram Framework for Zero-Shot Link Predictioncited by 9
  9. 2023Understand the Dynamic World: An End-to-End Knowledge Informed Framework for Open Domain Entity State Trackingcited by 9
  10. 2023Learning In-context Learning for Named Entity Recognitioncited by 7
  11. 2020Multi-Fusion Chinese WordNet (MCW) : Compound of Machine Learning and Manual Correctioncited by 4
  12. 2023W-procer: Weighted Prototypical Contrastive Learning for Medical Few-Shot Named Entity Recognitioncited by 4

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Citing papers per year: 2023: 3; 2024: 8; 2025: 3.

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  1. 2024Large Language Models Struggle in Token-Level Clinical Named Entity Recognition
  2. 2024LLMs in Biomedicine: A study on clinical Named Entity Recognition
  3. 2025Retrieval augmented generation based dynamic prompting for few-shot biomedical named entity recognition using large language models
  4. 2023Inspire the Large Language Model by External Knowledge on BioMedical Named Entity Recognition
  5. 2024Improving Few-Shot Cross-Domain Named Entity Recognition by Instruction Tuning a Word-Embedding based Retrieval Augmented Large Language Model
  6. 2025LLM-based Prompt Ensemble for Reliable Medical Entity Recognition from EHRs
  7. 2025Leveraging Large Language Models for Rare Disease Named Entity Recognition
  8. 2023Self-Improving for Zero-Shot Named Entity Recognition with Large Language Models