Strengthening structural baselines for graph classification using Local Topological Profile
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Abstract (arXiv)
We present the analysis of the topological graph descriptor Local Degree Profile (LDP), which forms a widely used structural baseline for graph classification. Our study focuses on model evaluation in the context of the recently developed fair evaluation framework, which defines rigorous routines for model selection and evaluation for graph classification, ensuring reproducibility and comparability of the results. Based on the obtained insights, we propose a new baseline algorithm called Local Topological Profile (LTP), which extends LDP by using additional centrality measures and local vertex descriptors. The new approach provides the results outperforming or very close to the latest GNNs for all datasets used. Specifically, state-of-the-art results were obtained for 4 out of 9 benchmark datasets. We also consider computational aspects of LDP-based feature extraction and model construction to propose practical improvements affecting execution speed and scalability. This allows for handling modern, large datasets and extends the portfolio of benchmarks used in graph representation learning. As the outcome of our work, we obtained LTP as a simple to understand, fast and scalable, still robust baseline, capable of outcompeting modern graph classification models such as Graph Isomorphism Network (GIN). We provide open-source implementation at hrefhttps://github.com/j-adamczyk/LTPGitHub.
Key facts. Cited by 7 papers in the map (data through 14 Oct 2026). Builds on 16 of its 39 references that are in the map. First posted on arXiv 1 May 2023.
Builds on
16 of 39 references.
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4 more
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Citing papers per year: 2024: 2; 2025: 3; 2026: 2.
7 papers.
- 2025Benchmarking Pretrained Molecular Embedding Models For Molecular Representation Learningcited by 15
- 2024Molecular Topological Profile (MOLTOP) -- Simple and Strong Baseline for Molecular Graph Classificationcited by 7
- 2025Evaluating machine learning models for predicting pesticide toxicity to honey beescited by 2
- 2025Towards Rational Pesticide Design with Graph Machine Learning Models for Ecotoxicologycited by 1
- 2026Measuring Structure in Graph Benchmark Datasets Using Graph Invariantscited by 1
- 2024End-to-end Stroke imaging analysis, using reservoir computing-based effective connectivity, and interpretable Artificial intelligencecited by 0
- 2026GLASS: Graph-Language Alignment with Spherical Scoring for Transferable Graph-Level Anomaly Detectioncited by 0
- 2026GLASS: Graph-Language Alignment with Spherical Scoring for Transferable Graph-Level Anomaly Detection4 Sep 2026
- 2026Measuring Structure in Graph Benchmark Datasets Using Graph Invariants7 May 2026
- 2025Towards Rational Pesticide Design with Graph Machine Learning Models for Ecotoxicology23 Sep 2025
- 2025Benchmarking Pretrained Molecular Embedding Models For Molecular Representation Learning8 Aug 2025
- 2025Evaluating machine learning models for predicting pesticide toxicity to honey bees31 Mar 2025
- 2024End-to-end Stroke imaging analysis, using reservoir computing-based effective connectivity, and interpretable Artificial intelligence17 Jul 2024
- 2024Molecular Topological Profile (MOLTOP) -- Simple and Strong Baseline for Molecular Graph Classification16 Jul 2024