Enhancing the Inductive Biases of Graph Neural ODE for Modeling Dynamical Systems
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Abstract (arXiv)
Neural networks with physics based inductive biases such as Lagrangian neural networks (LNN), and Hamiltonian neural networks (HNN) learn the dynamics of physical systems by encoding strong inductive biases. Alternatively, Neural ODEs with appropriate inductive biases have also been shown to give similar performances. However, these models, when applied to particle based systems, are transductive in nature and hence, do not generalize to large system sizes. In this paper, we present a graph based neural ODE, GNODE, to learn the time evolution of dynamical systems. Further, we carefully analyse the role of different inductive biases on the performance of GNODE. We show that, similar to LNN and HNN, encoding the constraints explicitly can significantly improve the training efficiency and performance of GNODE significantly. Our experiments also assess the value of additional inductive biases, such as Newtons third law, on the final performance of the model. We demonstrate that inducing these biases can enhance the performance of model by orders of magnitude in terms of both energy violation and rollout error. Interestingly, we observe that the GNODE trained with the most effective inductive biases, namely MCGNODE, outperforms the graph versions of LNN and HNN, namely, Lagrangian graph networks (LGN) and Hamiltonian graph networks (HGN) in terms of energy violation error by approx 4 orders of magnitude for a pendulum system, and approx 2 orders of magnitude for spring systems. These results suggest that competitive performances with energy conserving neural networks can be obtained for NODE based systems by inducing appropriate inductive biases.
Key facts. Cited by 20 papers in the map (data through 7 Oct 2026). Builds on 16 of its 26 references that are in the map. First posted on arXiv 22 Sep 2022.
Builds on
16 of 26 references.
References · 16
- 2018Neural Ordinary Differential Equationscited by 3,733
- 2021E(n) Equivariant Graph Neural Networkscited by 951
- 2020Learning to Simulate Complex Physics with Graph Networkscited by 867
- 2019Hamiltonian Neural Networkscited by 702
- 2020Lagrangian Neural Networkscited by 388
- 2020Discovering Symbolic Models from Deep Learning with Inductive Biasescited by 335
- 2019Deep Lagrangian Networks: Using Physics as Model Prior for Deep Learningcited by 205
- 2019Symplectic ODE-Net: Learning Hamiltonian Dynamics with Controlcited by 183
- 2019Hamiltonian Graph Networks with ODE Integratorscited by 107
- 2020Simplifying Hamiltonian and Lagrangian Neural Networks via Explicit Constraintscited by 102
- 2020Dissipative SymODEN: Encoding Hamiltonian Dynamics with Dissipation and Control into Deep Learningcited by 77
- 2022Equivariant Graph Mechanics Networks with Constraintscited by 67
4 more
- 2020Benchmarking Energy-Conserving Neural Networks for Learning Dynamics from Datacited by 40
- 2022Deconstructing the Inductive Biases of Hamiltonian Neural Networkscited by 31
- 2021Physics-Augmented Learning: A New Paradigm Beyond Physics-Informed Learningcited by 11
- 2021Identifying Physical Law of Hamiltonian Systems via Meta-Learningcited by 8
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Citing papers per year: 2022: 2; 2023: 8; 2024: 6; 2025: 3; 2026: 1.
20 papers.
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- 2023SEGNO: Generalizing Equivariant Graph Neural Networks with Physical Inductive Biasescited by 27
- 2024Recent Advances on Machine Learning for Computational Fluid Dynamics: A Surveycited by 27
- 2022Unravelling the Performance of Physics-informed Graph Neural Networks for Dynamical Systemscited by 23
- 2022Learning Articulated Rigid Body Dynamics with Lagrangian Graph Neural Networkcited by 22
- 2025Graph ODEs and Beyond: A Comprehensive Survey on Integrating Differential Equations with Graph Neural Networkscited by 14
- 2023Mirage: Model-Agnostic Graph Distillation for Graph Classificationcited by 13
- 2024Hybrid2 Neural ODE Causal Modeling and an Application to Glycemic Responsecited by 13
- 2023Node Embedding from Neural Hamiltonian Orbits in Graph Neural Networkscited by 12
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarkingcited by 11
- 2023GRAFENNE: Learning on Graphs with Heterogeneous and Dynamic Feature Setscited by 7
- 2023PGODE: Towards High-quality System Dynamics Modelingcited by 7
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equationcited by 6
8 more
- 2023StriderNET: A Graph Reinforcement Learning Approach to Optimize Atomic Structures on Rough Energy Landscapescited by 4
- 2024DEL: Discrete Element Learner for Learning 3D Particle Dynamics with Neural Renderingcited by 4
- 2024A hybrid numerical methodology coupling Reduced Order Modeling and Graph Neural Networks for non-parametric geometries: applications to structural dynamics problemscited by 3
- 2023Graph Neural Stochastic Differential Equations for Learning Brownian Dynamicscited by 2
- 2024Bonsai: Gradient-free Graph Condensation for Node Classificationcited by 1
- 2025Learning Spatio-Temporal Dynamics for Trajectory Recovery via Time-Aware Transformercited by 1
- 2026PiGGO: Physics-Guided Learnable Graph Kalman Filters for Virtual Sensing of Nonlinear Dynamic Structures under Uncertaintycited by 1
- 2025Domain-Decomposed Graph Neural Network Surrogate Modeling for Ice Sheetscited by 0
- 2026PiGGO: Physics-Guided Learnable Graph Kalman Filters for Virtual Sensing of Nonlinear Dynamic Structures under Uncertainty29 Apr 2026
- 2025Domain-Decomposed Graph Neural Network Surrogate Modeling for Ice Sheets1 Dec 2025
- 2025Learning Spatio-Temporal Dynamics for Trajectory Recovery via Time-Aware Transformer20 May 2025
- 2025Graph ODEs and Beyond: A Comprehensive Survey on Integrating Differential Equations with Graph Neural Networks29 Mar 2025
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equation15 Nov 2024
- 2024Bonsai: Gradient-free Graph Condensation for Node Classification23 Oct 2024
- 2024DEL: Discrete Element Learner for Learning 3D Particle Dynamics with Neural Rendering11 Oct 2024
- 2024Recent Advances on Machine Learning for Computational Fluid Dynamics: A Survey22 Aug 2024
- 2024A hybrid numerical methodology coupling Reduced Order Modeling and Graph Neural Networks for non-parametric geometries: applications to structural dynamics problems3 Jun 2024
- 2024Hybrid2 Neural ODE Causal Modeling and an Application to Glycemic Response27 Feb 2024
- 2023PGODE: Towards High-quality System Dynamics Modeling11 Nov 2023
- 2023Mirage: Model-Agnostic Graph Distillation for Graph Classification14 Oct 2023
8 more
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarking3 Oct 2023
- 2023SEGNO: Generalizing Equivariant Graph Neural Networks with Physical Inductive Biases25 Aug 2023
- 2023Graph Neural Stochastic Differential Equations for Learning Brownian Dynamics20 Jun 2023
- 2023GRAFENNE: Learning on Graphs with Heterogeneous and Dynamic Feature Sets6 Jun 2023
- 2023Node Embedding from Neural Hamiltonian Orbits in Graph Neural Networks30 May 2023
- 2023StriderNET: A Graph Reinforcement Learning Approach to Optimize Atomic Structures on Rough Energy Landscapes29 Jan 2023
- 2022Unravelling the Performance of Physics-informed Graph Neural Networks for Dynamical Systems10 Nov 2022
- 2022Learning Articulated Rigid Body Dynamics with Lagrangian Graph Neural Network23 Sep 2022
- 2023SEGNO: Generalizing Equivariant Graph Neural Networks with Physical Inductive Biasescited by 27
- 2024Recent Advances on Machine Learning for Computational Fluid Dynamics: A Surveycited by 27
- 2022Unravelling the Performance of Physics-informed Graph Neural Networks for Dynamical Systemscited by 23
- 2022Learning Articulated Rigid Body Dynamics with Lagrangian Graph Neural Networkcited by 22
- 2025Graph ODEs and Beyond: A Comprehensive Survey on Integrating Differential Equations with Graph Neural Networkscited by 14
- 2023Mirage: Model-Agnostic Graph Distillation for Graph Classificationcited by 13
- 2024Hybrid2 Neural ODE Causal Modeling and an Application to Glycemic Responsecited by 13
- 2023Node Embedding from Neural Hamiltonian Orbits in Graph Neural Networkscited by 12
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarkingcited by 11
- 2023GRAFENNE: Learning on Graphs with Heterogeneous and Dynamic Feature Setscited by 7
- 2023PGODE: Towards High-quality System Dynamics Modelingcited by 7
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equationcited by 6
12 most cited of 20 All 20 (JSON)
- 2026PiGGO: Physics-Guided Learnable Graph Kalman Filters for Virtual Sensing of Nonlinear Dynamic Structures under Uncertainty29 Apr 2026
- 2025Domain-Decomposed Graph Neural Network Surrogate Modeling for Ice Sheets1 Dec 2025
- 2025Learning Spatio-Temporal Dynamics for Trajectory Recovery via Time-Aware Transformer20 May 2025
- 2025Graph ODEs and Beyond: A Comprehensive Survey on Integrating Differential Equations with Graph Neural Networks29 Mar 2025
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equation15 Nov 2024
- 2024Bonsai: Gradient-free Graph Condensation for Node Classification23 Oct 2024
- 2024DEL: Discrete Element Learner for Learning 3D Particle Dynamics with Neural Rendering11 Oct 2024
- 2024Recent Advances on Machine Learning for Computational Fluid Dynamics: A Survey22 Aug 2024
- 2024A hybrid numerical methodology coupling Reduced Order Modeling and Graph Neural Networks for non-parametric geometries: applications to structural dynamics problems3 Jun 2024
- 2024Hybrid2 Neural ODE Causal Modeling and an Application to Glycemic Response27 Feb 2024
- 2023PGODE: Towards High-quality System Dynamics Modeling11 Nov 2023
- 2023Mirage: Model-Agnostic Graph Distillation for Graph Classification14 Oct 2023
12 newest of 20 All 20 (JSON)