CorticalFlow: A Diffeomorphic Mesh Deformation Module for Cortical Surface Reconstruction
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Abstract (arXiv)
In this paper we introduce CorticalFlow, a new geometric deep-learning model that, given a 3-dimensional image, learns to deform a reference template towards a targeted object. To conserve the template mesh's topological properties, we train our model over a set of diffeomorphic transformations. This new implementation of a flow Ordinary Differential Equation (ODE) framework benefits from a small GPU memory footprint, allowing the generation of surfaces with several hundred thousand vertices. To reduce topological errors introduced by its discrete resolution, we derive numeric conditions which improve the manifoldness of the predicted triangle mesh. To exhibit the utility of CorticalFlow, we demonstrate its performance for the challenging task of brain cortical surface reconstruction. In contrast to current state-of-the-art, CorticalFlow produces superior surfaces while reducing the computation time from nine and a half minutes to one second. More significantly, CorticalFlow enforces the generation of anatomically plausible surfaces; the absence of which has been a major impediment restricting the clinical relevance of such surface reconstruction methods.
Key facts. Cited by 5 papers in the map (data through 13 Oct 2026). Builds on 38 of its 82 references that are in the map. First posted on arXiv 6 Jun 2022.
Builds on
38 of 82 references.
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Built on by
Citing papers per year: 2023: 3; 2024: 0; 2025: 2.
5 papers.
- 2023Diffeomorphic Mesh Deformation via Efficient Optimal Transport for Cortical Surface Reconstructioncited by 7
- 2023Hybrid-CSR: Coupling Explicit and Implicit Shape Representation for Cortical Surface Reconstructioncited by 4
- 2023SurfNN: Joint Reconstruction of Multiple Cortical Surfaces from Magnetic Resonance Imagescited by 2
- 2025Template-Based Cortical Surface Reconstruction with Minimal Energy Deformationcited by 0
- 2025FEAorta: A Fully Automated Framework for Finite Element Analysis of the Aorta From 3D CT Imagescited by 0
- 2025FEAorta: A Fully Automated Framework for Finite Element Analysis of the Aorta From 3D CT Images8 Oct 2025
- 2025Template-Based Cortical Surface Reconstruction with Minimal Energy Deformation18 Sep 2025
- 2023Hybrid-CSR: Coupling Explicit and Implicit Shape Representation for Cortical Surface Reconstruction23 Jul 2023
- 2023Diffeomorphic Mesh Deformation via Efficient Optimal Transport for Cortical Surface Reconstruction27 May 2023
- 2023SurfNN: Joint Reconstruction of Multiple Cortical Surfaces from Magnetic Resonance Images6 Mar 2023