Deep Learning, Natural Language Processing, and Explainable Artificial Intelligence in the Biomedical Domain
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Abstract (arXiv)
In this article, we first give an introduction to artificial intelligence and its applications in biology and medicine in Section 1. Deep learning methods are then described in Section 2. We narrow down the focus of the study on textual data in Section 3, where natural language processing and its applications in the biomedical domain are described. In Section 4, we give an introduction to explainable artificial intelligence and discuss the importance of explainability of artificial intelligence systems, especially in the biomedical domain.
Key facts. Cited by 4 papers in the map (data through 7 Oct 2026). Builds on 33 of its 106 references that are in the map. First posted on arXiv 25 Feb 2022.
Builds on
33 of 106 references.
References · 33
- 2017Attention Is All You Needcited by 59,932
- 2013Distributed Representations of Words and Phrases and their Compositionalitycited by 3,462
- 2018Deep contextualized word representationscited by 2,285
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,935
- 2019CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparisoncited by 1,410
- 2019SciBERT: A Pretrained Language Model for Scientific Textcited by 1,404
- 2017Towards A Rigorous Science of Interpretable Machine Learningcited by 1,400
- 2017Counterfactual Explanations without Opening the Black Box: Automated Decisions and the GDPRcited by 1,086
- 2019Publicly Available Clinical BERT Embeddingscited by 995
- 2018A Survey Of Methods For Explaining Black Box Modelscited by 970
- 2016The Mythos of Model Interpretabilitycited by 716
- 2019A Survey on Explainable Artificial Intelligence (XAI): Towards Medical XAIcited by 403
21 more
- 2016Model-Agnostic Interpretability of Machine Learningcited by 219
- 2015Interpretable classifiers using rules and Bayesian analysis: Building a better stroke prediction modelcited by 140
- 2017What do we need to build explainable AI systems for the medical domain?cited by 127
- 2020The role of explainability in creating trustworthy artificial intelligence for health care: a comprehensive survey of the terminology, design choices, and evaluation strategiescited by 91
- 2021Evaluating the Robustness of Neural Language Models to Input Perturbationscited by 87
- 2017Interpretable & Explorable Approximations of Black Box Modelscited by 54
- 2018From Word to Sense Embeddings: A Survey on Vector Representations of Meaningcited by 49
- 2016Deep Learning in Bioinformaticscited by 48
- 2019Probing Biomedical Embeddings from Language Modelscited by 39
- 2019Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilationcited by 30
- 2018A Comparison of Word Embeddings for the Biomedical Natural Language Processingcited by 29
- 2020Post-hoc explanation of black-box classifiers using confident itemsetscited by 21
- 2019Deep neural network or dermatologist?cited by 20
- 2019Generation of Multimodal Justification Using Visual Word Constraint Model for Explainable Computer-Aided Diagnosiscited by 18
- 2017Deep Convolutional Neural Networks for Interpretable Analysis of EEG Sleep Stage Scoringcited by 15
- 2018Analyzing Neuroimaging Data Through Recurrent Deep Learning Modelscited by 15
- 2018Autofocus Layer for Semantic Segmentationcited by 13
- 2018Magnetic Resonance Spectroscopy Quantification using Deep Learningcited by 8
- 2020Explaining Black-box Models for Biomedical Text Classificationcited by 7
- 2020Deep Convolutional Neural Networks: A survey of the foundations, selected improvements, and some current applicationscited by 3
- 2016Quantifying the informativeness for biomedical literature summarization: An itemset mining methodcited by 1
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Citing papers per year: 2023: 2; 2024: 0; 2025: 2.
4 papers.
- 2025Explainability in Practice: A Survey of Explainable NLP Across Various Domainscited by 11
- 2023Model-agnostic explainable artificial intelligence for object detection in image datacited by 6
- 2025MedVAL: Toward Expert-Level Medical Text Validation with Language Modelscited by 3
- 2023Explainable AI in Orthopedics: Challenges, Opportunities, and Prospectscited by 1
- 2025MedVAL: Toward Expert-Level Medical Text Validation with Language Models3 Jul 2025
- 2025Explainability in Practice: A Survey of Explainable NLP Across Various Domains2 Feb 2025
- 2023Explainable AI in Orthopedics: Challenges, Opportunities, and Prospects9 Aug 2023
- 2023Model-agnostic explainable artificial intelligence for object detection in image data30 Mar 2023