On the relationship between calibrated predictors and unbiased volume estimation
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Abstract (arXiv)
Machine learning driven medical image segmentation has become standard in medical image analysis. However, deep learning models are prone to overconfident predictions. This has led to a renewed focus on calibrated predictions in the medical imaging and broader machine learning communities. Calibrated predictions are estimates of the probability of a label that correspond to the true expected value of the label conditioned on the confidence. Such calibrated predictions have utility in a range of medical imaging applications, including surgical planning under uncertainty and active learning systems. At the same time it is often an accurate volume measurement that is of real importance for many medical applications. This work investigates the relationship between model calibration and volume estimation. We demonstrate both mathematically and empirically that if the predictor is calibrated per image, we can obtain the correct volume by taking an expectation of the probability scores per pixel/voxel of the image. Furthermore, we show that convex combinations of calibrated classifiers preserve volume estimation, but do not preserve calibration. Therefore, we conclude that having a calibrated predictor is a sufficient, but not necessary condition for obtaining an unbiased estimate of the volume. We validate our theoretical findings empirically on a collection of 18 different (calibrated) training strategies on the tasks of glioma volume estimation on BraTS 2018, and ischemic stroke lesion volume estimation on ISLES 2018 datasets.
Key facts. Cited by 11 papers in the map (data through 14 Oct 2026). Builds on 13 of its 31 references that are in the map. First posted on arXiv 23 Dec 2021.
Builds on
13 of 31 references.
References · 13
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2017On Calibration of Modern Neural Networkscited by 4,960
- 2015Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learningcited by 4,448
- 2016Simple and Scalable Predictive Uncertainty Estimation using Deep Ensemblescited by 3,926
- 2018Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challengecited by 511
- 2019Verified Uncertainty Calibrationcited by 309
- 2018A Probabilistic U-Net for Segmentation of Ambiguous Imagescited by 283
- 2019PHiSeg: Capturing Uncertainty in Medical Image Segmentationcited by 128
- 2018No New-Netcited by 61
- 2019Non-Parametric Calibration for Classificationcited by 57
- 2020Optimization for Medical Image Segmentation: Theory and Practice when evaluating with Dice Score or Jaccard Indexcited by 52
- 2018Towards safe deep learning: accurately quantifying biomarker uncertainty in neural network predictionscited by 25
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Citing papers per year: 2022: 4; 2023: 5; 2024: 0; 2025: 2.
11 papers.
- 2025Uncertainty Quantification for Machine Learning in Healthcare: A Surveycited by 14
- 2023Jaccard Metric Losses: Optimizing the Jaccard Index with Soft Labelscited by 12
- 2023Beyond Classification: Definition and Density-based Estimation of Calibration in Object Detectioncited by 9
- 2022RankSEG: A Consistent Ranking-based Framework for Segmentationcited by 7
- 2022On Image Segmentation With Noisy Labels: Characterization and Volume Properties of the Optimal Solutions to Accuracy and Dicecited by 6
- 2023Dice Semimetric Losses: Optimizing the Dice Score with Soft Labelscited by 5
- 2022Usable Region Estimate for Assessing Practical Usability of Medical Image Segmentation Modelscited by 3
- 2023Noisy Image Segmentation With Soft-Dicecited by 1
- 2022Identifying and Combating Bias in Segmentation Networks by leveraging multiple resolutionscited by 0
- 2023Marginal Thresholding in Noisy Image Segmentationcited by 0
- 2025CARE: Confidence-aware Ratio Estimation for Medical Biomarkerscited by 0
- 2025CARE: Confidence-aware Ratio Estimation for Medical Biomarkers26 May 2025
- 2025Uncertainty Quantification for Machine Learning in Healthcare: A Survey4 May 2025
- 2023Beyond Classification: Definition and Density-based Estimation of Calibration in Object Detection11 Dec 2023
- 2023Marginal Thresholding in Noisy Image Segmentation8 Apr 2023
- 2023Noisy Image Segmentation With Soft-Dice3 Apr 2023
- 2023Dice Semimetric Losses: Optimizing the Dice Score with Soft Labels28 Mar 2023
- 2023Jaccard Metric Losses: Optimizing the Jaccard Index with Soft Labels11 Feb 2023
- 2022Usable Region Estimate for Assessing Practical Usability of Medical Image Segmentation Models1 Jul 2022
- 2022Identifying and Combating Bias in Segmentation Networks by leveraging multiple resolutions29 Jun 2022
- 2022RankSEG: A Consistent Ranking-based Framework for Segmentation27 Jun 2022
- 2022On Image Segmentation With Noisy Labels: Characterization and Volume Properties of the Optimal Solutions to Accuracy and Dice13 Jun 2022