mlsanityData to 7 Oct 2026

Reconstruction for Powerful Graph Representations

arXiv 2110.00577 ↗First posted 1 Oct 2021cs.LG cs.AI cs.DMcited by 65

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Abstract (arXiv)

Graph neural networks (GNNs) have limited expressive power, failing to represent many graph classes correctly. While more expressive graph representation learning (GRL) alternatives can distinguish some of these classes, they are significantly harder to implement, may not scale well, and have not been shown to outperform well-tuned GNNs in real-world tasks. Thus, devising simple, scalable, and expressive GRL architectures that also achieve real-world improvements remains an open challenge. In this work, we show the extent to which graph reconstruction -- reconstructing a graph from its subgraphs -- can mitigate the theoretical and practical problems currently faced by GRL architectures. First, we leverage graph reconstruction to build two new classes of expressive graph representations. Secondly, we show how graph reconstruction boosts the expressive power of any GNN architecture while being a (provably) powerful inductive bias for invariances to vertex removals. Empirically, we show how reconstruction can boost GNN's expressive power -- while maintaining its invariance to permutations of the vertices -- by solving seven graph property tasks not solvable by the original GNN. Further, we demonstrate how it boosts state-of-the-art GNN's performance across nine real-world benchmark datasets.

Key facts. Cited by 65 papers in the map (data through 7 Oct 2026). Builds on 68 of its 111 references that are in the map. First posted on arXiv 1 Oct 2021.

Builds on

68 of 111 references.

References · 68

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38 more
  1. 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,037
  2. 2018Weisfeiler and Leman Go Neural: Higher-order Graph Neural Networkscited by 878
  3. 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 875
  4. 2018Hierarchical Graph Representation Learning with Differentiable Poolingcited by 786
  5. 2015Convolutional Networks on Graphs for Learning Molecular Fingerprintscited by 751
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  7. 2019DropEdge: Towards Deep Graph Convolutional Networks on Node Classificationcited by 679
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50 most cited of 68 All 68 (JSON)

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2021: 4; 2022: 12; 2023: 18; 2024: 17; 2025: 12; 2026: 2.

65 papers.

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  1. 2022Sign and Basis Invariant Networks for Spectral Graph Representation Learningcited by 176
  2. 2021Equivariant Subgraph Aggregation Networkscited by 154
  3. 2021From Stars to Subgraphs: Uplifting Any GNN with Local Structure Awarenesscited by 154
  4. 2021Weisfeiler and Leman go Machine Learning: The Story so farcited by 121
  5. 2023Rethinking the Expressive Power of GNNs via Graph Biconnectivitycited by 119
  6. 2022Understanding and Extending Subgraph GNNs by Rethinking Their Symmetriescited by 112
  7. 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
  8. 2022How Powerful are K-hop Message Passing Graph Neural Networkscited by 90
  9. 2023A Complete Expressiveness Hierarchy for Subgraph GNNs via Subgraph Weisfeiler-Lehman Testscited by 64
  10. 2022Ordered Subgraph Aggregation Networkscited by 57
  11. 2022Boosting the Cycle Counting Power of Graph Neural Networks with I2-GNNscited by 55
  12. 2022A Theoretical Comparison of Graph Neural Network Extensionscited by 47
38 more
  1. 2022Message passing all the way upcited by 47
  2. 2023Equivariant Polynomials for Graph Neural Networkscited by 38
  3. 2024Beyond Weisfeiler-Lehman: A Quantitative Framework for GNN Expressivenesscited by 38
  4. 2022SpeqNets: Sparsity-aware Permutation-equivariant Graph Networkscited by 37
  5. 2023An Empirical Study of Realized GNN Expressivenesscited by 33
  6. 2023Path Neural Networks: Expressive and Accurate Graph Neural Networkscited by 32
  7. 2023WL meet VCcited by 30
  8. 2023Graph Positional Encoding via Random Feature Propagationcited by 30
  9. 2023The Expressive Power of Graph Neural Networks: A Surveycited by 27
  10. 2022Exponentially Improving the Complexity of Simulating the Weisfeiler-Lehman Test with Graph Neural Networkscited by 20
  11. 2023Efficient Subgraph GNNs by Learning Effective Selection Policiescited by 17
  12. 2024On the Expressive Power of Spectral Invariant Graph Neural Networkscited by 15
  13. 2022Agent-based Graph Neural Networkscited by 13
  14. 2023An Efficient Subgraph GNN with Provable Substructure Counting Powercited by 13
  15. 2023Extending the Design Space of Graph Neural Networks by Rethinking Folklore Weisfeiler-Lehmancited by 13
  16. 2024Weisfeiler-Leman at the margin: When more expressivity matterscited by 13
  17. 2022From Local to Global: Spectral-Inspired Graph Neural Networkscited by 11
  18. 2023Distance-Restricted Folklore Weisfeiler-Leman GNNs with Provable Cycle Counting Powercited by 11
  19. 2023Graph Transformers for Large Graphscited by 9
  20. 2024Improving the Expressiveness of K-hop Message-Passing GNNs by Injecting Contextualized Substructure Informationcited by 9
  21. 2024Subgraphormer: Unifying Subgraph GNNs and Graph Transformers via Graph Productscited by 8
  22. 2024A Flexible, Equivariant Framework for Subgraph GNNs via Graph Products and Graph Coarseningcited by 8
  23. 2025Flock: A Knowledge Graph Foundation Model via Learning on Random Walkscited by 8
  24. 2024GRANOLA: Adaptive Normalization for Graph Neural Networkscited by 7
  25. 2024Future Directions in the Theory of Graph Machine Learningcited by 5
  26. 2025Balancing Efficiency and Expressiveness: Subgraph GNNs with Walk-Based Centralitycited by 5
  27. 2023What Do GNNs Actually Learn? Towards Understanding their Representationscited by 4
  28. 2024Demystifying Higher-Order Graph Neural Networkscited by 4
  29. 2025Homomorphism Expressivity of Spectral Invariant Graph Neural Networkscited by 4
  30. 2023Combining Stochastic Explainers and Subgraph Neural Networks can Increase Expressivity and Interpretabilitycited by 3
  31. 2024Foundations and Frontiers of Graph Learning Theorycited by 3
  32. 2025Logical Expressiveness of Graph Neural Networks with Hierarchical Node Individualizationcited by 3
  33. 2021Subgraph Permutation Equivariant Networkscited by 2
  34. 2023Probabilistic Invariant Learning with Randomized Linear Classifierscited by 2
  35. 2023Permutation-Invariant Graph Partitioning:How Graph Neural Networks Capture Structural Interactions?cited by 2
  36. 2024Scalable Expressiveness through Preprocessed Graph Perturbationscited by 2
  37. 2024How Hard Is It for Message-Passing GNNs to Simulate One Weisfeiler-Lehman Color-Refinement Step?cited by 2
  38. 2024Towards Stable, Globally Expressive Graph Representations with Laplacian Eigenvectorscited by 2

50 most cited of 65 All 65 (JSON)