Entity Linking and Discovery via Arborescence-based Supervised Clustering
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Abstract (arXiv)
Previous work has shown promising results in performing entity linking by measuring not only the affinities between mentions and entities but also those amongst mentions. In this paper, we present novel training and inference procedures that fully utilize mention-to-mention affinities by building minimum arborescences (i.e., directed spanning trees) over mentions and entities across documents in order to make linking decisions. We also show that this method gracefully extends to entity discovery, enabling the clustering of mentions that do not have an associated entity in the knowledge base. We evaluate our approach on the Zero-Shot Entity Linking dataset and MedMentions, the largest publicly available biomedical dataset, and show significant improvements in performance for both entity linking and discovery compared to identically parameterized models. We further show significant efficiency improvements with only a small loss in accuracy over previous work, which use more computationally expensive models.
Key facts. Cited by 22 papers in the map (data through 7 Oct 2026). Builds on 30 of its 66 references that are in the map. First posted on arXiv 2 Sep 2021.
Builds on
30 of 66 references.
References · 30
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18 more
- 2019Scalable Zero-shot Entity Linking with Dense Entity Retrievalcited by 85
- 2017Deep Joint Entity Disambiguation with Local Neural Attentioncited by 79
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Citing papers per year: 2022: 2; 2023: 8; 2024: 7; 2025: 2; 2026: 3.
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- 2022Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuningcited by 34
- 2024Maverick: Efficient and Accurate Coreference Resolution Defying Recent Trendscited by 19
- 2023Bring Your Own KG: Self-Supervised Program Synthesis for Zero-Shot KGQAcited by 11
- 2022Modeling Fine-grained Information via Knowledge-aware Hierarchical Graph for Zero-shot Entity Retrievalcited by 9
- 2024HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization toolscited by 8
- 2023BELB: a Biomedical Entity Linking Benchmarkcited by 7
- 2024Learning from Negative Samples in Biomedical Generative Entity Linkingcited by 6
- 2023NASTyLinker: NIL-Aware Scalable Transformer-based Entity Linkercited by 5
- 2023Improving Dual-Encoder Training through Dynamic Indexes for Negative Miningcited by 5
- 2023CoRTEx: Contrastive Learning for Representing Terms via Explanations with Applications on Constructing Biomedical Knowledge Graphscited by 5
- 2023Fast, Scalable, Warm-Start Semidefinite Programming with Spectral Bundling and Sketchingcited by 4
- 2024BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguationcited by 4
10 more
- 2024DynamicER: Resolving Emerging Mentions to Dynamic Entities for RAGcited by 4
- 2023Towards Better Entity Linking with Multi-View Enhanced Distillationcited by 3
- 2023xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalizationcited by 3
- 2024Span-Oriented Information Extraction -- A Unifying Perspective on Information Extractioncited by 2
- 2024Comparing Neighbors Together Makes it Easy: Jointly Comparing Multiple Candidates for Efficient and Effective Retrievalcited by 2
- 2025Explainable ICD Coding via Entity Linkingcited by 1
- 2026SynCABEL: Synthetic Contextualized Augmentation for Biomedical Entity Linkingcited by 1
- 2025Mah=an=ama: A Unique Testbed for Literary Entity Discovery and Linkingcited by 0
- 2026LongBEL: Long-Context and Document-Consistent Biomedical Entity Linkingcited by 0
- 2026BELXTR: Biomedical Entity Linking via Contextualized Token Retrievalcited by 0
- 2026BELXTR: Biomedical Entity Linking via Contextualized Token Retrieval22 Sep 2026
- 2026LongBEL: Long-Context and Document-Consistent Biomedical Entity Linking13 May 2026
- 2026SynCABEL: Synthetic Contextualized Augmentation for Biomedical Entity Linking27 Jan 2026
- 2025Mah=an=ama: A Unique Testbed for Literary Entity Discovery and Linking24 Sep 2025
- 2025Explainable ICD Coding via Entity Linking26 Mar 2025
- 2024DynamicER: Resolving Emerging Mentions to Dynamic Entities for RAG15 Oct 2024
- 2024Learning from Negative Samples in Biomedical Generative Entity Linking29 Aug 2024
- 2024Maverick: Efficient and Accurate Coreference Resolution Defying Recent Trends31 Jul 2024
- 2024Comparing Neighbors Together Makes it Easy: Jointly Comparing Multiple Candidates for Efficient and Effective Retrieval21 May 2024
- 2024Span-Oriented Information Extraction -- A Unifying Perspective on Information Extraction18 Mar 2024
- 2024HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools19 Feb 2024
- 2024BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguation10 Jan 2024
10 more
- 2023Fast, Scalable, Warm-Start Semidefinite Programming with Spectral Bundling and Sketching19 Dec 2023
- 2023CoRTEx: Contrastive Learning for Representing Terms via Explanations with Applications on Constructing Biomedical Knowledge Graphs13 Dec 2023
- 2023Bring Your Own KG: Self-Supervised Program Synthesis for Zero-Shot KGQA14 Nov 2023
- 2023xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization17 Oct 2023
- 2023BELB: a Biomedical Entity Linking Benchmark22 Aug 2023
- 2023Towards Better Entity Linking with Multi-View Enhanced Distillation27 May 2023
- 2023Improving Dual-Encoder Training through Dynamic Indexes for Negative Mining27 Mar 2023
- 2023NASTyLinker: NIL-Aware Scalable Transformer-based Entity Linker8 Mar 2023
- 2022Modeling Fine-grained Information via Knowledge-aware Hierarchical Graph for Zero-shot Entity Retrieval20 Nov 2022
- 2022Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning11 Apr 2022
- 2022Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuningcited by 34
- 2024Maverick: Efficient and Accurate Coreference Resolution Defying Recent Trendscited by 19
- 2023Bring Your Own KG: Self-Supervised Program Synthesis for Zero-Shot KGQAcited by 11
- 2022Modeling Fine-grained Information via Knowledge-aware Hierarchical Graph for Zero-shot Entity Retrievalcited by 9
- 2024HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization toolscited by 8
- 2023BELB: a Biomedical Entity Linking Benchmarkcited by 7
- 2024Learning from Negative Samples in Biomedical Generative Entity Linkingcited by 6
- 2023NASTyLinker: NIL-Aware Scalable Transformer-based Entity Linkercited by 5
- 2023Improving Dual-Encoder Training through Dynamic Indexes for Negative Miningcited by 5
- 2023CoRTEx: Contrastive Learning for Representing Terms via Explanations with Applications on Constructing Biomedical Knowledge Graphscited by 5
- 2023Fast, Scalable, Warm-Start Semidefinite Programming with Spectral Bundling and Sketchingcited by 4
- 2024BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguationcited by 4
12 most cited of 21 All 21 (JSON)
- 2026BELXTR: Biomedical Entity Linking via Contextualized Token Retrieval22 Sep 2026
- 2026LongBEL: Long-Context and Document-Consistent Biomedical Entity Linking13 May 2026
- 2026SynCABEL: Synthetic Contextualized Augmentation for Biomedical Entity Linking27 Jan 2026
- 2025Mah=an=ama: A Unique Testbed for Literary Entity Discovery and Linking24 Sep 2025
- 2025Explainable ICD Coding via Entity Linking26 Mar 2025
- 2024Learning from Negative Samples in Biomedical Generative Entity Linking29 Aug 2024
- 2024Maverick: Efficient and Accurate Coreference Resolution Defying Recent Trends31 Jul 2024
- 2024Comparing Neighbors Together Makes it Easy: Jointly Comparing Multiple Candidates for Efficient and Effective Retrieval21 May 2024
- 2024Span-Oriented Information Extraction -- A Unifying Perspective on Information Extraction18 Mar 2024
- 2024HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools19 Feb 2024
- 2024BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguation10 Jan 2024
- 2023Fast, Scalable, Warm-Start Semidefinite Programming with Spectral Bundling and Sketching19 Dec 2023
12 newest of 21 All 21 (JSON)