Line Graph Neural Networks for Link Prediction
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Abstract (arXiv)
We consider the graph link prediction task, which is a classic graph analytical problem with many real-world applications. With the advances of deep learning, current link prediction methods commonly compute features from subgraphs centered at two neighboring nodes and use the features to predict the label of the link between these two nodes. In this formalism, a link prediction problem is converted to a graph classification task. In order to extract fixed-size features for classification, graph pooling layers are necessary in the deep learning model, thereby incurring information loss. To overcome this key limitation, we propose to seek a radically different and novel path by making use of the line graphs in graph theory. In particular, each node in a line graph corresponds to a unique edge in the original graph. Therefore, link prediction problems in the original graph can be equivalently solved as a node classification problem in its corresponding line graph, instead of a graph classification task. Experimental results on fourteen datasets from different applications demonstrate that our proposed method consistently outperforms the state-of-the-art methods, while it has fewer parameters and high training efficiency.
Key facts. Cited by 89 papers in the map (data through 7 Oct 2026). First posted on arXiv 20 Oct 2020.
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Citing papers per year: 2021: 8; 2022: 15; 2023: 17; 2024: 24; 2025: 16; 2026: 9.
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- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
- 2021Learning from Counterfactual Links for Link Predictioncited by 69
- 2022Message passing all the way upcited by 47
- 2022Linkless Link Prediction via Relational Distillationcited by 39
- 2022Graph Lifelong Learning: A Surveycited by 30
- 2023Class-Imbalanced Graph Learning without Class Rebalancingcited by 29
- 2024Towards Effective and General Graph Unlearning via Mutual Evolutioncited by 29
- 2022Bring Your Own View: Graph Neural Networks for Link Prediction with Personalized Subgraph Selectioncited by 26
- 2024AdaFGL: A New Paradigm for Federated Node Classification with Topology Heterogeneitycited by 25
- 2021Cycle Representation Learning for Inductive Relation Predictioncited by 23
- 2024Optimizing OOD Detection in Molecular Graphs: A Novel Approach with Diffusion Modelscited by 21
38 more
- 2024Continual Learning on Graphs: Challenges, Solutions, and Opportunitiescited by 20
- 2023GrOVe: Ownership Verification of Graph Neural Networks using Embeddingscited by 16
- 2023Towards Semi-supervised Universal Graph Classificationcited by 15
- 2022Federated Graph Machine Learning: A Survey of Concepts, Techniques, and Applicationscited by 14
- 2022Line Graph Contrastive Learning for Link Predictioncited by 13
- 2023Knowledge Graph Completion with Counterfactual Augmentationcited by 13
- 2022Link Prediction with Non-Contrastive Learningcited by 11
- 2023ERASE: Error-Resilient Representation Learning on Graphs for Label Noise Tolerancecited by 11
- 2022Sampling Enclosing Subgraphs for Link Predictioncited by 9
- 2022Learning Hypergraphs From Signals With Dual Smoothness Priorcited by 9
- 2023RegExplainer: Generating Explanations for Graph Neural Networks in Regression Taskscited by 9
- 2024SupplyGraph: A Benchmark Dataset for Supply Chain Planning using Graph Neural Networkscited by 9
- 2023Vertical Federated Learning: Taxonomies, Threats, and Prospectscited by 8
- 2023Spectral Heterogeneous Graph Convolutions via Positive Noncommutative Polynomialscited by 8
- 2024LPNL: Scalable Link Prediction with Large Language Modelscited by 7
- 2024Graph Neural Networks in Supply Chain Analytics and Optimization: Concepts, Perspectives, Dataset and Benchmarkscited by 7
- 2022BSAL: A Framework of Bi-component Structure and Attribute Learning for Link Predictioncited by 6
- 2022Two-Dimensional Weisfeiler-Lehman Graph Neural Networks for Link Predictioncited by 6
- 2022Conjugate Product Graphs for Globally Optimal 2D-3D Shape Matchingcited by 6
- 2024Equivariant Graph Network Approximations of High-Degree Polynomials for Force Field Predictioncited by 6
- 2021Node2Seq: Towards Trainable Convolutions in Graph Neural Networkscited by 5
- 2022GIDN: A Lightweight Graph Inception Diffusion Network for High-efficient Link Predictioncited by 5
- 2023Clarify Confused Nodes via Separated Learningcited by 5
- 2024Graph Unitary Message Passingcited by 5
- 2024Multi-View Subgraph Neural Networks: Self-Supervised Learning with Scarce Labeled Datacited by 5
- 2024Node Duplication Improves Cold-start Link Predictioncited by 4
- 2025Bridging Theory and Practice in Link Representation with Graph Neural Networkscited by 4
- 2021Harnessing the Power of Ego Network Layers for Link Prediction in Online Social Networkscited by 3
- 2023Link Prediction for Flow-Driven Spatial Networkscited by 3
- 2023Link Prediction without Graph Neural Networkscited by 3
- 2024DGNN: Decoupled Graph Neural Networks with Structural Consistency between Attribute and Graph Embedding Representationscited by 3
- 2024Can GNNs Learn Link Heuristics? A Concise Review and Evaluation of Link Prediction Methodscited by 3
- 2021Exact Recovery of Community Structures Using DeepWalk and Node2veccited by 2
- 2021HMSG: Heterogeneous Graph Neural Network based on Metapath Subgraph Learningcited by 2
- 2023A Signed Subgraph Encoding Approach via Linear Optimization for Link Sign Predictioncited by 2
- 2024PHLP: Sole Persistent Homology for Link Prediction - Interpretable Feature Extractioncited by 2
- 2024Automated Label Unification for Multi-Dataset Semantic Segmentation with GNNscited by 2
- 2024Dynamic Neural Dowker Network: Approximating Persistent Homology in Dynamic Directed Graphscited by 2
50 most cited of 89 All 89 (JSON)
- 2026On the Expressive Power of Implicit Line-Graph Higher-Order Weisfeiler--Leman14 Sep 2026
- 2026LION: A Clifford Neural Paradigm for Multimodal-Attributed Graph Learning25 Aug 2026
- 2026Towards Graph-Based Deep Learning for Map Generalization: Insights from Building Footprints Simplification and Aggregation18 Jun 2026
- 2026Instance Discrimination for Link Prediction18 May 2026
- 2026GravityGraphSAGE: Link Prediction in Directed Attributed Graphs10 May 2026
- 2026SatQNet: Satellite-assisted Quantum Network Entanglement Routing Using Directed Line Graph Neural Networks10 Apr 2026
- 2026LineGraph2Road: Structural Graph Reasoning on Line Graphs for Road Network Extraction26 Feb 2026
- 2026LION: A Clifford Neural Paradigm for Multimodal-Attributed Graph Learning29 Jan 2026
- 2026Rethinking Federated Graph Foundation Models: A Graph-Language Alignment-based Approach29 Jan 2026
- 2025A Community-Enhanced Graph Representation Model for Link Prediction24 Dec 2025
- 2025LGAN: An Efficient High-Order Graph Neural Network via the Line Graph Aggregation11 Dec 2025
- 2025An Interdisciplinary and Cross-Task Review on Missing Data Imputation3 Nov 2025
38 more
- 2025Message Passing on the Edge: Towards Scalable and Expressive GNNs15 Oct 2025
- 2025A pseudo-inverse of a line graph13 Aug 2025
- 2025DynamiX: Large-Scale Dynamic Social Network Simulator26 Jul 2025
- 2025Bridging Theory and Practice in Link Representation with Graph Neural Networks30 Jun 2025
- 2025Directed Link Prediction using GNN with Local and Global Feature Fusion25 Jun 2025
- 2025Residual Reweighted Conformal Prediction for Graph Neural Networks9 Jun 2025
- 2025Towards Unbiased Federated Graph Learning: Label and Topology Perspectives14 Apr 2025
- 2025Federated Prototype Graph Learning13 Apr 2025
- 2025FairACE: Achieving Degree Fairness in Graph Neural Networks via Contrastive and Adversarial Group-Balanced Training12 Apr 2025
- 2025Prediction of Usage Probabilities of Shopping-Mall Corridors Using Heterogeneous Graph Neural Networks10 Apr 2025
- 2025ADKGD: Anomaly Detection in Knowledge Graphs with Dual-Channel Training13 Jan 2025
- 2025Graph Contrastive Learning on Multi-label Classification for Recommendations13 Jan 2025
- 2025CHAT: Beyond Contrastive Graph Transformer for Link Prediction in Heterogeneous Networks6 Jan 2025
- 2024Introduction to Graph Neural Networks for Machine Learning Engineers27 Dec 2024
- 2024Towards Data-centric Machine Learning on Directed Graphs: a Survey28 Nov 2024
- 2024Can GNNs Learn Link Heuristics? A Concise Review and Evaluation of Link Prediction Methods22 Nov 2024
- 2024Graph Neural Networks in Supply Chain Analytics and Optimization: Concepts, Perspectives, Dataset and Benchmarks13 Nov 2024
- 2024Equivariant Graph Network Approximations of High-Degree Polynomials for Force Field Prediction6 Nov 2024
- 2024Theoretical Insights into Line Graph Transformation on Graph Learning21 Oct 2024
- 2024Towards characterizing the value of edge embeddings in Graph Neural Networks13 Oct 2024
- 2024PROXI: Challenging the GNNs for Link Prediction2 Oct 2024
- 2024Dynamic Neural Dowker Network: Approximating Persistent Homology in Dynamic Directed Graphs17 Aug 2024
- 2024Automated Label Unification for Multi-Dataset Semantic Segmentation with GNNs15 Jul 2024
- 2024Graph Edge Representation via Tensor Product Graph Convolutional Representation21 Jun 2024
- 2024Motif-driven Subgraph Structure Learning for Graph Classification13 Jun 2024
- 2024GLADformer: A Mixed Perspective for Graph-level Anomaly Detection2 Jun 2024
- 2024Optimizing OOD Detection in Molecular Graphs: A Novel Approach with Diffusion Models24 Apr 2024
- 2024PHLP: Sole Persistent Homology for Link Prediction - Interpretable Feature Extraction23 Apr 2024
- 2024Multi-View Subgraph Neural Networks: Self-Supervised Learning with Scarce Labeled Data19 Apr 2024
- 2024Graph Unitary Message Passing17 Mar 2024
- 2024Continual Learning on Graphs: Challenges, Solutions, and Opportunities18 Feb 2024
- 2024Node Duplication Improves Cold-start Link Prediction15 Feb 2024
- 2024DGNN: Decoupled Graph Neural Networks with Structural Consistency between Attribute and Graph Embedding Representations28 Jan 2024
- 2024SupplyGraph: A Benchmark Dataset for Supply Chain Planning using Graph Neural Networks27 Jan 2024
- 2024LPNL: Scalable Link Prediction with Large Language Models24 Jan 2024
- 2024Towards Effective and General Graph Unlearning via Mutual Evolution22 Jan 2024
- 2024AdaFGL: A New Paradigm for Federated Node Classification with Topology Heterogeneity22 Jan 2024
- 2023Concept Prerequisite Relation Prediction by Using Permutation-Equivariant Directed Graph Neural Networks15 Dec 2023
50 newest of 89 All 89 (JSON)
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
- 2021Learning from Counterfactual Links for Link Predictioncited by 69
- 2022Message passing all the way upcited by 47
- 2022Linkless Link Prediction via Relational Distillationcited by 39
- 2022Graph Lifelong Learning: A Surveycited by 30
- 2023Class-Imbalanced Graph Learning without Class Rebalancingcited by 29
- 2022Bring Your Own View: Graph Neural Networks for Link Prediction with Personalized Subgraph Selectioncited by 26
- 2024AdaFGL: A New Paradigm for Federated Node Classification with Topology Heterogeneitycited by 25
- 2021Cycle Representation Learning for Inductive Relation Predictioncited by 23
- 2024Continual Learning on Graphs: Challenges, Solutions, and Opportunitiescited by 20
- 2023GrOVe: Ownership Verification of Graph Neural Networks using Embeddingscited by 16
12 most cited of 86 All 86 (JSON)
- 2026On the Expressive Power of Implicit Line-Graph Higher-Order Weisfeiler--Leman14 Sep 2026
- 2026LION: A Clifford Neural Paradigm for Multimodal-Attributed Graph Learning25 Aug 2026
- 2026Towards Graph-Based Deep Learning for Map Generalization: Insights from Building Footprints Simplification and Aggregation18 Jun 2026
- 2026Instance Discrimination for Link Prediction18 May 2026
- 2026GravityGraphSAGE: Link Prediction in Directed Attributed Graphs10 May 2026
- 2026SatQNet: Satellite-assisted Quantum Network Entanglement Routing Using Directed Line Graph Neural Networks10 Apr 2026
- 2026LineGraph2Road: Structural Graph Reasoning on Line Graphs for Road Network Extraction26 Feb 2026
- 2026LION: A Clifford Neural Paradigm for Multimodal-Attributed Graph Learning29 Jan 2026
- 2025A Community-Enhanced Graph Representation Model for Link Prediction24 Dec 2025
- 2025LGAN: An Efficient High-Order Graph Neural Network via the Line Graph Aggregation11 Dec 2025
- 2025An Interdisciplinary and Cross-Task Review on Missing Data Imputation3 Nov 2025
- 2025Message Passing on the Edge: Towards Scalable and Expressive GNNs15 Oct 2025
12 newest of 86 All 86 (JSON)