Data-Driven Discovery of Molecular Photoswitches with Multioutput Gaussian Processes
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Abstract (arXiv)
Photoswitchable molecules display two or more isomeric forms that may be accessed using light. Separating the electronic absorption bands of these isomers is key to selectively addressing a specific isomer and achieving high photostationary states whilst overall red-shifting the absorption bands serves to limit material damage due to UV-exposure and increases penetration depth in photopharmacological applications. Engineering these properties into a system through synthetic design however, remains a challenge. Here, we present a data-driven discovery pipeline for molecular photoswitches underpinned by dataset curation and multitask learning with Gaussian processes. In the prediction of electronic transition wavelengths, we demonstrate that a multioutput Gaussian process (MOGP) trained using labels from four photoswitch transition wavelengths yields the strongest predictive performance relative to single-task models as well as operationally outperforming time-dependent density functional theory (TD-DFT) in terms of the wall-clock time for prediction. We validate our proposed approach experimentally by screening a library of commercially available photoswitchable molecules. Through this screen, we identified several motifs that displayed separated electronic absorption bands of their isomers, exhibited red-shifted absorptions, and are suited for information transfer and photopharmacological applications. Our curated dataset, code, as well as all models are made available at https://github.com/Ryan-Rhys/The-Photoswitch-Dataset
Key facts. Cited by 14 papers in the map (data through 7 Oct 2026). First posted on arXiv 28 Jun 2020.
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Citing papers per year: 2022: 2; 2023: 0; 2024: 5; 2025: 4; 2026: 3.
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- 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?cited by 46
- 2022GAUCHE: A Library for Gaussian Processes in Chemistrycited by 40
- 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spacescited by 13
- 2025Large language models as uncertainty-calibrated optimizers for experimental discoverycited by 10
- 2024Best Practices for Multi-Fidelity Bayesian Optimization in Materials and Molecular Researchcited by 7
- 2024Constrained Multi-objective Bayesian Optimization through Optimistic Constraints Estimationcited by 6
- 2024Ranking over Regression for Bayesian Optimization and Molecule Selectioncited by 4
- 2025The Catechol Benchmark: Time-series Solvent Selection Data for Few-shot Machine Learningcited by 3
- 2022Thermal half-lives of azobenzene derivatives: virtual screening based on intersystem crossing using a machine learning potentialcited by 2
- 2024Polyatomic Complexes: A topologically-informed learning representation for atomistic systemscited by 1
- 2025SoDaDE: Solvent Data-Driven Embeddings with Small Transformer Modelscited by 1
- 2026Sample Efficient Generative Optimization for Molecular Designcited by 1
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- 2026Triply-Scalable Equivariant Gaussian Process Modeling17 Sep 2026
- 2026Sample Efficient Generative Optimization for Molecular Design14 Jul 2026
- 2026Beyond Learning on Molecules by Weakly Supervising on Molecules4 Feb 2026
- 2025SoDaDE: Solvent Data-Driven Embeddings with Small Transformer Models26 Sep 2025
- 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spaces5 Jul 2025
- 2025The Catechol Benchmark: Time-series Solvent Selection Data for Few-shot Machine Learning9 Jun 2025
- 2025Large language models as uncertainty-calibrated optimizers for experimental discovery8 Apr 2025
- 2024Constrained Multi-objective Bayesian Optimization through Optimistic Constraints Estimation6 Nov 2024
- 2024Ranking over Regression for Bayesian Optimization and Molecule Selection11 Oct 2024
- 2024Best Practices for Multi-Fidelity Bayesian Optimization in Materials and Molecular Research1 Oct 2024
- 2024Polyatomic Complexes: A topologically-informed learning representation for atomistic systems23 Sep 2024
- 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?7 Feb 2024
- 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?cited by 46
- 2022GAUCHE: A Library for Gaussian Processes in Chemistrycited by 40
- 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spacescited by 13
- 2025Large language models as uncertainty-calibrated optimizers for experimental discoverycited by 10
- 2024Best Practices for Multi-Fidelity Bayesian Optimization in Materials and Molecular Researchcited by 7
- 2024Constrained Multi-objective Bayesian Optimization through Optimistic Constraints Estimationcited by 6
- 2024Ranking over Regression for Bayesian Optimization and Molecule Selectioncited by 4
- 2025The Catechol Benchmark: Time-series Solvent Selection Data for Few-shot Machine Learningcited by 3
- 2022Thermal half-lives of azobenzene derivatives: virtual screening based on intersystem crossing using a machine learning potentialcited by 2
- 2024Polyatomic Complexes: A topologically-informed learning representation for atomistic systemscited by 1
- 2025SoDaDE: Solvent Data-Driven Embeddings with Small Transformer Modelscited by 1
- 2026Sample Efficient Generative Optimization for Molecular Designcited by 1
12 most cited of 14 All 14 (JSON)
- 2026Triply-Scalable Equivariant Gaussian Process Modeling17 Sep 2026
- 2026Sample Efficient Generative Optimization for Molecular Design14 Jul 2026
- 2026Beyond Learning on Molecules by Weakly Supervising on Molecules4 Feb 2026
- 2025SoDaDE: Solvent Data-Driven Embeddings with Small Transformer Models26 Sep 2025
- 2025Return of the Latent Space COWBOYS: Re-thinking the use of VAEs for Bayesian Optimisation of Structured Spaces5 Jul 2025
- 2025The Catechol Benchmark: Time-series Solvent Selection Data for Few-shot Machine Learning9 Jun 2025
- 2025Large language models as uncertainty-calibrated optimizers for experimental discovery8 Apr 2025
- 2024Constrained Multi-objective Bayesian Optimization through Optimistic Constraints Estimation6 Nov 2024
- 2024Ranking over Regression for Bayesian Optimization and Molecule Selection11 Oct 2024
- 2024Best Practices for Multi-Fidelity Bayesian Optimization in Materials and Molecular Research1 Oct 2024
- 2024Polyatomic Complexes: A topologically-informed learning representation for atomistic systems23 Sep 2024
- 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?7 Feb 2024
12 newest of 14 All 14 (JSON)