Chart Auto-Encoders for Manifold Structured Data
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Abstract (arXiv)
Deep generative models have made tremendous advances in image and signal representation learning and generation. These models employ the full Euclidean space or a bounded subset as the latent space, whose flat geometry, however, is often too simplistic to meaningfully reflect the manifold structure of the data. In this work, we advocate the use of a multi-chart latent space for better data representation. Inspired by differential geometry, we propose a Chart Auto-Encoder (CAE) and prove a universal approximation theorem on its representation capability. We show that the training data size and the network size scale exponentially in approximation error with an exponent depending on the intrinsic dimension of the data manifold. CAE admits desirable manifold properties that auto-encoders with a flat latent space fail to obey, predominantly proximity of data. We conduct extensive experimentation with synthetic and real-life examples to demonstrate that CAE provides reconstruction with high fidelity, preserves proximity in the latent space, and generates new data remaining near the manifold. These experiments show that CAE is advantageous over existing auto-encoders and variants by preserving the topology of the data manifold as well as its geometry.
Key facts. Cited by 32 papers in the map (data through 7 Oct 2026). First posted on arXiv 20 Dec 2019.
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Citing papers per year: 2021: 4; 2022: 4; 2023: 6; 2024: 9; 2025: 5; 2026: 4.
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- 2024Metric Flow Matching for Smooth Interpolations on the Data Manifoldcited by 74
- 2024Deep Generative Models through the Lens of the Manifold Hypothesis: A Survey and New Connectionscited by 47
- 2021Data-driven discovery of intrinsic dynamicscited by 45
- 2023Manifold Learning by Mixture Models of VAEs for Inverse Problemscited by 16
- 2024Convergence Analysis of Flow Matching in Latent Space with Transformerscited by 16
- 2021Partition of unity networks: deep hp-approximationcited by 15
- 2024Generalization Error Guaranteed Auto-Encoder-Based Nonlinear Model Reduction for Operator Learningcited by 12
- 2021Density estimation on smooth manifolds with normalizing flowscited by 10
- 2023Deep Nonparametric Estimation of Intrinsic Data Structures by Chart Autoencoders: Generalization Error and Robustnesscited by 10
- 2022Semi-Supervised Manifold Learning with Complexity Decoupled Chart Autoencoderscited by 8
- 2024Pulling back symmetric Riemannian geometry for data analysiscited by 8
- 2024Decoder ensembling for learned latent geometriescited by 6
20 more
- 2023Deep ReLU Networks Have Surprisingly Simple Polytopescited by 5
- 2023Real-time Animation Generation and Control on Rigged Models via Large Language Modelscited by 5
- 2021Atlas Generative Models and Geodesic Interpolationcited by 4
- 2024Unsupervised Solution Operator Learning for Mean-Field Games via Sampling-Invariant Parametrizationscited by 3
- 2025Distributional Autoencoders Know the Scorecited by 3
- 2025Transformers for Learning on Noisy and Task-Level Manifolds: Approximation and Generalization Insightscited by 3
- 2025Learning Geometry and Topology via Multi-Chart Flowscited by 3
- 2022Manifoldron: Direct Space Partition via Manifold Discoverycited by 2
- 2022Probabilistic partition of unity networks for high-dimensional regression problemscited by 2
- 2023Are We Using Autoencoders in a Wrong Way?cited by 2
- 2023Building symmetries into data-driven manifold dynamics models for complex flows: application to two-dimensional Kolmogorov flowcited by 2
- 2024A Theoretical Study of Neural Network Expressive Power via Manifold Topologycited by 2
- 2022Is an encoder within reach?cited by 1
- 2026Geometric regularization of autoencoders via observed stochastic dynamicscited by 1
- 2026SMIXAE: Towards Unsupervised Manifold Discovery in Language Modelscited by 1
- 2024Thinner Latent Spaces: Detecting Dimension and Imposing Invariance with Conformal Autoencoderscited by 0
- 2025Atlas Gaussian processes on restricted domains and point cloudscited by 0
- 2025Data-Driven Model Reduction using WeldNet: Windowed Encoders for Learning Dynamicscited by 0
- 2026Learning Tangent Bundles and Characteristic Classes with Autoencoder Atlasescited by 0
- 2026The Data Manifold under the Microscopecited by 0
- 2026The Data Manifold under the Microscope14 Jun 2026
- 2026SMIXAE: Towards Unsupervised Manifold Discovery in Language Models9 May 2026
- 2026Geometric regularization of autoencoders via observed stochastic dynamics17 Apr 2026
- 2026Learning Tangent Bundles and Characteristic Classes with Autoencoder Atlases26 Feb 2026
- 2025Data-Driven Model Reduction using WeldNet: Windowed Encoders for Learning Dynamics11 Dec 2025
- 2025Atlas Gaussian processes on restricted domains and point clouds19 Nov 2025
- 2025Learning Geometry and Topology via Multi-Chart Flows30 May 2025
- 2025Transformers for Learning on Noisy and Task-Level Manifolds: Approximation and Generalization Insights6 May 2025
- 2025Distributional Autoencoders Know the Score17 Feb 2025
- 2024A Theoretical Study of Neural Network Expressive Power via Manifold Topology21 Oct 2024
- 2024Thinner Latent Spaces: Detecting Dimension and Imposing Invariance with Conformal Autoencoders28 Aug 2024
- 2024Decoder ensembling for learned latent geometries14 Aug 2024
20 more
- 2024Metric Flow Matching for Smooth Interpolations on the Data Manifold23 May 2024
- 2024Deep Generative Models through the Lens of the Manifold Hypothesis: A Survey and New Connections3 Apr 2024
- 2024Convergence Analysis of Flow Matching in Latent Space with Transformers3 Apr 2024
- 2024Pulling back symmetric Riemannian geometry for data analysis11 Mar 2024
- 2024Unsupervised Solution Operator Learning for Mean-Field Games via Sampling-Invariant Parametrizations27 Jan 2024
- 2024Generalization Error Guaranteed Auto-Encoder-Based Nonlinear Model Reduction for Operator Learning19 Jan 2024
- 2023Building symmetries into data-driven manifold dynamics models for complex flows: application to two-dimensional Kolmogorov flow15 Dec 2023
- 2023Real-time Animation Generation and Control on Rigged Models via Large Language Models27 Oct 2023
- 2023Are We Using Autoencoders in a Wrong Way?4 Sep 2023
- 2023Deep ReLU Networks Have Surprisingly Simple Polytopes16 May 2023
- 2023Manifold Learning by Mixture Models of VAEs for Inverse Problems27 Mar 2023
- 2023Deep Nonparametric Estimation of Intrinsic Data Structures by Chart Autoencoders: Generalization Error and Robustness17 Mar 2023
- 2022Probabilistic partition of unity networks for high-dimensional regression problems6 Oct 2022
- 2022Semi-Supervised Manifold Learning with Complexity Decoupled Chart Autoencoders22 Aug 2022
- 2022Is an encoder within reach?3 Jun 2022
- 2022Manifoldron: Direct Space Partition via Manifold Discovery14 Jan 2022
- 2021Data-driven discovery of intrinsic dynamics12 Aug 2021
- 2021Density estimation on smooth manifolds with normalizing flows7 Jun 2021
- 2021Atlas Generative Models and Geodesic Interpolation30 Jan 2021
- 2021Partition of unity networks: deep hp-approximation27 Jan 2021
- 2021Data-driven discovery of intrinsic dynamicscited by 45
- 2023Manifold Learning by Mixture Models of VAEs for Inverse Problemscited by 16
- 2021Partition of unity networks: deep hp-approximationcited by 15
- 2024Generalization Error Guaranteed Auto-Encoder-Based Nonlinear Model Reduction for Operator Learningcited by 12
- 2021Density estimation on smooth manifolds with normalizing flowscited by 10
- 2023Deep Nonparametric Estimation of Intrinsic Data Structures by Chart Autoencoders: Generalization Error and Robustnesscited by 10
- 2022Semi-Supervised Manifold Learning with Complexity Decoupled Chart Autoencoderscited by 8
- 2024Pulling back symmetric Riemannian geometry for data analysiscited by 8
- 2024Decoder ensembling for learned latent geometriescited by 6
- 2023Deep ReLU Networks Have Surprisingly Simple Polytopescited by 5
- 2023Real-time Animation Generation and Control on Rigged Models via Large Language Modelscited by 5
- 2021Atlas Generative Models and Geodesic Interpolationcited by 4
12 most cited of 28 All 28 (JSON)
- 2026The Data Manifold under the Microscope14 Jun 2026
- 2026SMIXAE: Towards Unsupervised Manifold Discovery in Language Models9 May 2026
- 2026Geometric regularization of autoencoders via observed stochastic dynamics17 Apr 2026
- 2026Learning Tangent Bundles and Characteristic Classes with Autoencoder Atlases26 Feb 2026
- 2025Data-Driven Model Reduction using WeldNet: Windowed Encoders for Learning Dynamics11 Dec 2025
- 2025Atlas Gaussian processes on restricted domains and point clouds19 Nov 2025
- 2025Learning Geometry and Topology via Multi-Chart Flows30 May 2025
- 2025Transformers for Learning on Noisy and Task-Level Manifolds: Approximation and Generalization Insights6 May 2025
- 2025Distributional Autoencoders Know the Score17 Feb 2025
- 2024A Theoretical Study of Neural Network Expressive Power via Manifold Topology21 Oct 2024
- 2024Thinner Latent Spaces: Detecting Dimension and Imposing Invariance with Conformal Autoencoders28 Aug 2024
- 2024Decoder ensembling for learned latent geometries14 Aug 2024
12 newest of 28 All 28 (JSON)