Integrating Graph Contextualized Knowledge into Pre-trained Language Models
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Abstract (arXiv)
Complex node interactions are common in knowledge graphs, and these interactions also contain rich knowledge information. However, traditional methods usually treat a triple as a training unit during the knowledge representation learning (KRL) procedure, neglecting contextualized information of the nodes in knowledge graphs (KGs). We generalize the modeling object to a very general form, which theoretically supports any subgraph extracted from the knowledge graph, and these subgraphs are fed into a novel transformer-based model to learn the knowledge embeddings. To broaden usage scenarios of knowledge, pre-trained language models are utilized to build a model that incorporates the learned knowledge representations. Experimental results demonstrate that our model achieves the state-of-the-art performance on several medical NLP tasks, and improvement above TransE indicates that our KRL method captures the graph contextualized information effectively.
Key facts. Cited by 26 papers in the map (data through 7 Oct 2026). First posted on arXiv 30 Nov 2019.
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Citing papers per year: 2021: 8; 2022: 7; 2023: 9; 2024: 1; 2025: 1.
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- 2021ERNIE 3.0: Large-scale Knowledge Enhanced Pre-training for Language Understanding and Generationcited by 258
- 2022LinkBERT: Pretraining Language Models with Document Linkscited by 209
- 2022Deep Bidirectional Language-Knowledge Graph Pretrainingcited by 156
- 2024Generating Long-form Story Using Dynamic Hierarchical Outlining with Memory-Enhancementcited by 30
- 2023Leveraging Medical Knowledge Graphs Into Large Language Models for Diagnosis Prediction: Design and Application Studycited by 29
- 2021Combining pre-trained language models and structured knowledgecited by 25
- 2022Cross-modal Clinical Graph Transformer for Ophthalmic Report Generationcited by 24
- 2022Multimodal Learning on Graphs for Disease Relation Extractioncited by 15
- 2023Large Knowledge Model: Perspectives and Challengescited by 12
- 2023Towards Medical Artificial General Intelligence via Knowledge-Enhanced Multimodal Pretrainingcited by 11
- 2021Structure Inducing Pre-Trainingcited by 10
- 2023Integrating UMLS Knowledge into Large Language Models for Medical Question Answeringcited by 10
14 more
- 2021Mixed Attention Transformer for Leveraging Word-Level Knowledge to Neural Cross-Lingual Information Retrievalcited by 8
- 2022ECOLA: Enhanced Temporal Knowledge Embeddings with Contextualized Language Representationscited by 7
- 2022A Retrieve-and-Read Framework for Knowledge Graph Link Predictioncited by 6
- 2021Coreference Resolution for the Biomedical Domain: A Surveycited by 5
- 2023Exploring the Reversal Curse and Other Deductive Logical Reasoning in BERT and GPT-Based Large Language Modelscited by 5
- 2021Focusing Knowledge-based Graph Argument Mining via Topic Modelingcited by 3
- 2021A Survey of Knowledge Enhanced Pre-trained Modelscited by 3
- 2023Protein Representation Learning via Knowledge Enhanced Primary Structure Modelingcited by 3
- 2021K-AID: Enhancing Pre-trained Language Models with Domain Knowledge for Question Answeringcited by 2
- 2023Adapter-TST: A Parameter Efficient Method for Multiple-Attribute Text Style Transfercited by 2
- 2023Question Answering with Deep Neural Networks for Semi-Structured Heterogeneous Genealogical Knowledge Graphscited by 2
- 2025BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignmentcited by 2
- 2022MLRIP: Pre-training a military language representation model with informative factual knowledge and professional knowledge basecited by 0
- 2023Make BERT-based Chinese Spelling Check Model Enhanced by Layerwise Attention and Gaussian Mixture Modelcited by 0
- 2025BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignment9 Sep 2025
- 2024Generating Long-form Story Using Dynamic Hierarchical Outlining with Memory-Enhancement18 Dec 2024
- 2023Make BERT-based Chinese Spelling Check Model Enhanced by Layerwise Attention and Gaussian Mixture Model27 Dec 2023
- 2023Exploring the Reversal Curse and Other Deductive Logical Reasoning in BERT and GPT-Based Large Language Models6 Dec 2023
- 2023Large Knowledge Model: Perspectives and Challenges5 Dec 2023
- 2023Integrating UMLS Knowledge into Large Language Models for Medical Question Answering4 Oct 2023
- 2023Leveraging Medical Knowledge Graphs Into Large Language Models for Diagnosis Prediction: Design and Application Study28 Aug 2023
- 2023Question Answering with Deep Neural Networks for Semi-Structured Heterogeneous Genealogical Knowledge Graphs30 Jul 2023
- 2023Adapter-TST: A Parameter Efficient Method for Multiple-Attribute Text Style Transfer10 May 2023
- 2023Towards Medical Artificial General Intelligence via Knowledge-Enhanced Multimodal Pretraining26 Apr 2023
- 2023Protein Representation Learning via Knowledge Enhanced Primary Structure Modeling30 Jan 2023
- 2022A Retrieve-and-Read Framework for Knowledge Graph Link Prediction19 Dec 2022
14 more
- 2022Deep Bidirectional Language-Knowledge Graph Pretraining17 Oct 2022
- 2022MLRIP: Pre-training a military language representation model with informative factual knowledge and professional knowledge base28 Jul 2022
- 2022Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation4 Jun 2022
- 2022LinkBERT: Pretraining Language Models with Document Links29 Mar 2022
- 2022ECOLA: Enhanced Temporal Knowledge Embeddings with Contextualized Language Representations17 Mar 2022
- 2022Multimodal Learning on Graphs for Disease Relation Extraction16 Mar 2022
- 2021A Survey of Knowledge Enhanced Pre-trained Models1 Oct 2021
- 2021Coreference Resolution for the Biomedical Domain: A Survey25 Sep 2021
- 2021K-AID: Enhancing Pre-trained Language Models with Domain Knowledge for Question Answering22 Sep 2021
- 2021Mixed Attention Transformer for Leveraging Word-Level Knowledge to Neural Cross-Lingual Information Retrieval7 Sep 2021
- 2021ERNIE 3.0: Large-scale Knowledge Enhanced Pre-training for Language Understanding and Generation5 Jul 2021
- 2021Structure Inducing Pre-Training18 Mar 2021
- 2021Focusing Knowledge-based Graph Argument Mining via Topic Modeling3 Feb 2021
- 2021Combining pre-trained language models and structured knowledge28 Jan 2021
- 2021ERNIE 3.0: Large-scale Knowledge Enhanced Pre-training for Language Understanding and Generationcited by 258
- 2022LinkBERT: Pretraining Language Models with Document Linkscited by 209
- 2022Deep Bidirectional Language-Knowledge Graph Pretrainingcited by 156
- 2024Generating Long-form Story Using Dynamic Hierarchical Outlining with Memory-Enhancementcited by 30
- 2023Leveraging Medical Knowledge Graphs Into Large Language Models for Diagnosis Prediction: Design and Application Studycited by 29
- 2021Combining pre-trained language models and structured knowledgecited by 25
- 2022Cross-modal Clinical Graph Transformer for Ophthalmic Report Generationcited by 24
- 2022Multimodal Learning on Graphs for Disease Relation Extractioncited by 15
- 2023Large Knowledge Model: Perspectives and Challengescited by 12
- 2023Towards Medical Artificial General Intelligence via Knowledge-Enhanced Multimodal Pretrainingcited by 11
- 2021Structure Inducing Pre-Trainingcited by 10
- 2023Integrating UMLS Knowledge into Large Language Models for Medical Question Answeringcited by 10
12 most cited of 25 All 25 (JSON)
- 2025BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignment9 Sep 2025
- 2024Generating Long-form Story Using Dynamic Hierarchical Outlining with Memory-Enhancement18 Dec 2024
- 2023Make BERT-based Chinese Spelling Check Model Enhanced by Layerwise Attention and Gaussian Mixture Model27 Dec 2023
- 2023Large Knowledge Model: Perspectives and Challenges5 Dec 2023
- 2023Integrating UMLS Knowledge into Large Language Models for Medical Question Answering4 Oct 2023
- 2023Leveraging Medical Knowledge Graphs Into Large Language Models for Diagnosis Prediction: Design and Application Study28 Aug 2023
- 2023Question Answering with Deep Neural Networks for Semi-Structured Heterogeneous Genealogical Knowledge Graphs30 Jul 2023
- 2023Adapter-TST: A Parameter Efficient Method for Multiple-Attribute Text Style Transfer10 May 2023
- 2023Towards Medical Artificial General Intelligence via Knowledge-Enhanced Multimodal Pretraining26 Apr 2023
- 2023Protein Representation Learning via Knowledge Enhanced Primary Structure Modeling30 Jan 2023
- 2022A Retrieve-and-Read Framework for Knowledge Graph Link Prediction19 Dec 2022
- 2022Deep Bidirectional Language-Knowledge Graph Pretraining17 Oct 2022
12 newest of 25 All 25 (JSON)