Integrating UMLS Knowledge into Large Language Models for Medical Question Answering
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Abstract (arXiv)
Large language models (LLMs) have demonstrated powerful text generation capabilities, bringing unprecedented innovation to the healthcare field. While LLMs hold immense promise for applications in healthcare, applying them to real clinical scenarios presents significant challenges, as these models may generate content that deviates from established medical facts and even exhibit potential biases. In our research, we develop an augmented LLM framework based on the Unified Medical Language System (UMLS), aiming to better serve the healthcare community. We employ LLaMa2-13b-chat and ChatGPT-3.5 as our benchmark models, and conduct automatic evaluations using the ROUGE Score and BERTScore on 104 questions from the LiveQA test set. Additionally, we establish criteria for physician-evaluation based on four dimensions: Factuality, Completeness, Readability and Relevancy. ChatGPT-3.5 is used for physician evaluation with 20 questions on the LiveQA test set. Multiple resident physicians conducted blind reviews to evaluate the generated content, and the results indicate that this framework effectively enhances the factuality, completeness, and relevance of generated content. Our research demonstrates the effectiveness of using UMLS-augmented LLMs and highlights the potential application value of LLMs in in medical question-answering.
Key facts. Cited by 10 papers in the map (data through 14 Oct 2026). Builds on 9 of its 23 references that are in the map. First posted on arXiv 4 Oct 2023.
Builds on
9 of 23 references.
References · 9
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Citing papers per year: 2023: 1; 2024: 6; 2025: 3.
10 papers.
- 2024Development and Testing of Retrieval Augmented Generation in Large Language Models -- A Case Study Reportcited by 13
- 2025Towards Omni-RAG: Comprehensive Retrieval-Augmented Generation for Large Language Models in Medical Applicationscited by 13
- 2025A Case Study Exploring the Current Landscape of Synthetic Medical Record Generation with Commercial LLMscited by 13
- 2024Generalizable and Scalable Multistage Biomedical Concept Normalization Leveraging Large Language Modelscited by 7
- 2025Rethinking Retrieval-Augmented Generation for Medicine: A Large-Scale, Systematic Expert Evaluation and Practical Insightscited by 6
- 2024Development of a Reliable and Accessible Caregiving Language Model (CaLM)cited by 5
- 2023Ascle: A Python Natural Language Processing Toolkit for Medical Text Generationcited by 3
- 2024Leveraging Large Language Models for Concept Graph Recovery and Question Answering in NLP Educationcited by 3
- 2024AlzheimerRAG: Multimodal Retrieval Augmented Generation for Clinical Use Cases using PubMed articlescited by 3
- 2024oRetrieval Augmented Generation for 10 Large Language Models and its Generalizability in Assessing Medical Fitnesscited by 1
- 2025Rethinking Retrieval-Augmented Generation for Medicine: A Large-Scale, Systematic Expert Evaluation and Practical Insights10 Nov 2025
- 2025A Case Study Exploring the Current Landscape of Synthetic Medical Record Generation with Commercial LLMs20 Apr 2025
- 2025Towards Omni-RAG: Comprehensive Retrieval-Augmented Generation for Large Language Models in Medical Applications5 Jan 2025
- 2024AlzheimerRAG: Multimodal Retrieval Augmented Generation for Clinical Use Cases using PubMed articles21 Dec 2024
- 2024oRetrieval Augmented Generation for 10 Large Language Models and its Generalizability in Assessing Medical Fitness11 Oct 2024
- 2024Generalizable and Scalable Multistage Biomedical Concept Normalization Leveraging Large Language Models24 May 2024
- 2024Development of a Reliable and Accessible Caregiving Language Model (CaLM)11 Mar 2024
- 2024Leveraging Large Language Models for Concept Graph Recovery and Question Answering in NLP Education22 Feb 2024
- 2024Development and Testing of Retrieval Augmented Generation in Large Language Models -- A Case Study Report29 Jan 2024
- 2023Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation28 Nov 2023