mlsanityData to 14 Oct 2026

Attributing Cohen's d: Training Data Attribution for Disease-Related Effects in Normative Age Biomarkers

arXiv 2609.07729 ↗First posted 7 Sep 2026cs.LG q-bio.QMcited by 0

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Abstract (arXiv)

Normative age models are trained to predict chronological age in a nominally healthy cohort. Applied to patients, they deviate, and the gap between predicted and chronological age is read as disease risk. Here, we attribute the disease-related effect size of the age gap directly to individual training samples, rather than using a prediction-level loss as the attribution target. For Cohen's d, the resulting closed-form influence functional, validated against leave-one-out retraining, ranks training samples by their effect on held-out case-control separation. Across four diseases and two biomarker modalities in UK Biobank, removing the 10% most influential training samples raises held-out disease-related effect size in every seed. It more than doubles the metabolomic-age effect for type-2 diabetes and raises the brain-age effect for multiple sclerosis by roughly a third. Random removal leaves effect size flat even at 50% removal, confirming the gain comes from which samples are removed, not how many. Flagged subjects carry subclinical cardiometabolic burden that diagnosis-based exclusion misses, on markers the model never sees. For type-2 diabetes, where the method gains most, the marker recovered is HbA1c, the standard measure of blood sugar control. We release pyinfluence, our influence-function package, for reproducibility and reuse.

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References · 9

  1. 2017Understanding Black-box Predictions via Influence Functionscited by 1,741
  2. 2019Data Shapley: Equitable Valuation of Data for Machine Learningcited by 629
  3. 2020Estimating Training Data Influence by Tracing Gradient Descentcited by 580
  4. 2023TRAK: Attributing Model Behavior at Scalecited by 283
  5. 2020Influence Functions in Deep Learning Are Fragilecited by 252
  6. 2022Datamodels: Predicting Predictions from Training Datacited by 189
  7. 2021Beta Shapley: a Unified and Noise-reduced Data Valuation Framework for Machine Learningcited by 165
  8. 2023Exploring Practitioner Perspectives On Training Data Attribution Explanationscited by 3
  9. 2024Towards User-Focused Research in Training Data Attribution for Human-Centered Explainable AIcited by 3

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