DrugReason: Dynamic Multi-View Reasoning over Knowledge Graph and Language Evidence for Drug Repurposing
On the map: LLM reasoning → Clinical and biomedical applications
Abstract (arXiv)
Drug repurposing aims to identify new therapeutic uses for existing compounds and, compared with de novo drug discovery, offers a faster and more cost-effective path to clinical translation. However, the space of candidate drug-disease pairs is enormous and their underlying relationships often depend on complex multi-hop biological mechanisms, making it difficult to reliably predict which pairs represent true therapeutic relationships. Existing approaches tackle this from two directions: knowledge graph-based methods organize curated biomedical evidence into structured relational networks for grounded multi-hop reasoning, while LLM-based methods leverage pretrained knowledge to generate flexible mechanistic rationales. Yet neither is sufficient alone - KGs are confined to observed graph structure while LLMs lack factual grounding and risk hallucination. To address this gap, we propose DrugReason, a multi-view reasoning framework that integrates grounded KG reasoning with LLM-generated mechanistic inference for drug repurposing. DrugReason adaptively routes diverse reasoning paths to specialized experts conditioned on the query context, while a cross-expert distillation objective enables knowledge sharing without sacrificing expert specialization. Experiments on PharmaDB, DDInter, and DrugBank show that DrugReason improves average performance over strong single-view reasoning baselines and achieves competitive or superior results compared with graph-based alternatives, while providing interpretable routing-based predictions.
Key facts. No citing papers in the map yet (data through 7 Oct 2026). Placed in Clinical and biomedical applications, one of 17 directions in LLM reasoning. Builds on 16 of its 56 references that are in the map. First posted on arXiv 6 Sep 2026.
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16 of 56 references.
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Same direction, newest first
- 2025MedReason: Eliciting Factual Medical Reasoning Steps in LLMs via Knowledge Graphs1 Apr
- 2025K-Paths: Reasoning over Graph Paths for Drug Repurposing and Drug Interaction Prediction18 Feb
Other references · 14
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- 2024GPT-4o System Cardcited by 4,467
- 2014Embedding Entities and Relations for Learning and Inference in Knowledge Basescited by 929
- 2020A Generalization of Transformer Networks to Graphscited by 653
- 2024Rationale-Guided Retrieval Augmented Generation for Medical Question Answeringcited by 41
- 2024DrugAgent: Automating AI-aided Drug Discovery Programming through LLM Multi-Agent Collaborationcited by 40
- 2023Biomedical knowledge graph-optimized prompt generation for large language modelscited by 30
- 2024BiomedRAG: A Retrieval Augmented Large Language Model for Biomedicinecited by 30
- 2024Tx-LLM: A Large Language Model for Therapeuticscited by 23
- 2025PharmAgents: Building a Virtual Pharma with Large Language Model Agentscited by 20
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- 2026Large Language Models Meet Biomedical Knowledge Graphs for Mechanistically Grounded Therapeutic Prioritization
- 2026LLM-Guided Monte Carlo Tree Search over Knowledge Graphs: Composing Mechanistic Explanations for Drug-Disease Pairs
- 2026UniD3: A Knowledge Graph-Enhanced RAG Framework for Drug-Disease Discovery and Reasoning
- 2026MolBioKG: Grounding Out-of-Graph Molecules in Biomedical Knowledge Graphs via Multi-Resolution Structural Anchoring
- 2025RareAgent: Self-Evolving Reasoning for Drug Repurposing in Rare Diseases
- 2026DeepRoot: A KG-Coordinated Multi-Agent System for Therapeutic Reasoning over Historical Medical Texts
- 2025Case-Based Reasoning Enhances the Predictive Power of LLMs in Drug-Drug Interaction
- 2025MedRule-KG: A Knowledge-Graph--Steered Scaffold for Reliable Mathematical and Biomedical Reasoning