mlsanityData to 14 Oct 2026

Metadata-Aware Adaptation of a Generative Foundation Model for Conditional CMR Synthesis

arXiv 2608.24342 ↗First posted 25 Aug 2026cs.CV cs.AIcited by 0

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Abstract (arXiv)

Synthetic image generation is a promising strategy to address data scarcity and the underrepresentation of clinically important phenotypes in medical imaging, yet generating images that faithfully reflect meaningful patient characteristics remains challenging. In this work, we investigate metadata-conditioned cardiac magnetic resonance (CMR) synthesis using a pretrained latent diffusion model, encoding structured clinical metadata and slice position as textual prompts to guide CMR generation. To improve metadata adherence and address the imbalance of clinical attributes, we integrate three strategies: Metadata-Free Classifier-Free Guidance (CFG), Contrastive Batching, and Inverse-Frequency Sampling. The framework was fine-tuned and evaluated on 59,058 short-axis CMR from the UK Biobank using paired image similarity, distributional fidelity, and subgroup-level analyses. The combined approach achieved a Fr'echet Inception Distance (FID) of 37.47, improving by 57.04% over the same model fine-tuned without these strategies and by 28.68% over a previous text-conditioned CMR diffusion baseline requiring cardiac geometry as additional input, while relying solely on patient metadata. This distributional gain, driven mainly by Metadata-Free CFG, came with a modest reduction in paired similarity, suggesting that the model prioritizes population-level realism over exact image reproduction. Subgroup analyses demonstrated improved alignment across demographic and acquisition-related metadata, with disease-specific conditioning being the most challenging task. These findings demonstrate the potential of generative foundation models for clinically meaningful CMR synthesis while highlighting the need for more effective metadata-aware conditioning strategies. Our code is available at https://github.com/rodriguezmarc/conditional-cmr.

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References · 12

  1. 2021High-Resolution Image Synthesis with Latent Diffusion Modelscited by 18,863
  2. 2022Classifier-Free Diffusion Guidancecited by 5,847
  3. 2022Brain Imaging Generation with Latent Diffusion Modelscited by 268
  4. 2019Effectively Unbiased FID and Inception Score and where to find themcited by 165
  5. 2023Generative models improve fairness of medical classifiers under distribution shiftscited by 90
  6. 2020Overcoming Barriers to Data Sharing with Medical Image Generation: A Comprehensive Evaluationcited by 36
  7. 2014Accelerating Minibatch Stochastic Gradient Descent using Stratified Samplingcited by 21
  8. 2022Feature robustness and sex differences in medical imaging: a case study in MRI-based Alzheimer's disease detectioncited by 19
  9. 2024Fr'echet Radiomic Distance (FRD): A Versatile Metric for Comparing Medical Imaging Datasetscited by 19
  10. 2023A Generalizable Deep Learning System for Cardiac MRIcited by 8
  11. 2023BatchSampler: Sampling Mini-Batches for Contrastive Learning in Vision, Language, and Graphscited by 7
  12. 2024Fairness-Aware Data Augmentation for Cardiac MRI using Text-Conditioned Diffusion Modelscited by 7

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  8. 2025Can Diffusion Models Bridge the Domain Gap in Cardiac MR Imaging?