Post-Operative Glioma Segmentation via Loss Stabilization, Normalization and Subspace Attention
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Abstract (arXiv)
Tracking residual tumor after surgery is essential for catching recurrence early, but automating post-operative glioma segmentation remains a difficult task. Although transformer-based architectures, such as SwinUNETR, achieved impressive results, few studies test how well they generalize across clinical protocols. In this paper, we conduct an ablation study on the MU-GLIOMA-POST and UCSF-ALPTDG datasets and show that the standard Generalized Dice Loss (GDL) is unstable under domain shift: the Whole Lesion (WL) Dice drops from 0.88 on the internal validation set to 0.73 on the external UCSF test set. To address this, we pair brain-masked percentile normalization with voxel-level contrastive learning. We also propose a Subspace-Aware Class Attention (SACA) module that re-calibrates the bottleneck features and raises Enhancing Tumor (ET) sensitivity by 8% (9.1% relative improvement) on internal validation. Ensembling these refinements with nnU-Net brings every stable configuration to a WL Dice of 0.94, and the SACA variant ensemble achieves the best boundary error (HD95) of 2.92 mm on MU-GLIOMA-POST.
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References · 13
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 2021Swin Transformer: Hierarchical Vision Transformer using Shifted Windowscited by 12,082
- 2017Squeeze-and-Excitation Networkscited by 4,763
- 2016Simple and Scalable Predictive Uncertainty Estimation using Deep Ensemblescited by 3,888
- 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,552
- 2018Attention U-Net: Learning Where to Look for the Pancreascited by 1,420
- 2022Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Imagescited by 823
- 2017Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentationscited by 614
- 2024nnU-Net Revisited: A Call for Rigorous Validation in 3D Medical Image Segmentationcited by 235
- 2021Unified Focal loss: Generalising Dice and cross entropy-based losses to handle class imbalanced medical image segmentationcited by 88
- 2024The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRIcited by 65
- 2021Momentum Contrastive Voxel-wise Representation Learning for Semi-supervised Volumetric Medical Image Segmentationcited by 49
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