mlsanityData to 14 Oct 2026

OpenBioRQ: Unsolved Biomedical Research Questions for Agents

arXiv 2606.21959 ↗First posted 20 Jun 2026cs.CLcited by 0

On the map: LLM agents and tool use → Medical and scientific domain agents

Abstract (arXiv)

A working citation looks like proof -- but the fact that a link resolves does not mean the cited paper supports the claim. I find that current agentic models rarely fabricate citations (over 99% resolve), yet roughly 15.9% link to the wrong paper. Existing benchmarks miss this failure mode: when a question has a fixed answer key, a model can reproduce the expected source from that key rather than independently verifying that the source supports the claim. I introduce textbfopenbiorq, a retrieval-grounded agentic benchmark of 12,553 unsolved biomedical research questions across 12 domains that treats open questions as a faithfulness-and-abstention probe. To my knowledge, this is the first biomedical benchmark to combine an agentic setting -- where the model must issue multiple tool calls -- with unsolved questions that have no answer key. Openness is verified against real follow-up evidence rather than a model's parametric knowledge. Difficulty is empirical: I anchor it on questions that three open-weight reference models fail to answer, rather than on subjective hardness labels. On this hardest subset, held-out models from the same lineage as the difficulty anchors solve only ~17%, while three independent frontier agents (Gemini-3-Pro, Opus-4.7, GPT-5.5) span a wide 29-60% range. The benchmark is thus hard, non-saturating (the best agent still leaves ~33-40% unsolved), and discriminating across capability tiers. Beyond difficulty, I observe agentic collapse on the hardest questions, where agents stop using their tools. For the most collapse-prone model, blocking tool access entirely barely changes its score -- so tools stop paying off exactly where they are needed most. A frozen per-question checklist raises inter-judge agreement from Spearman 0.35 to 0.82.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Placed in Medical and scientific domain agents, one of 16 directions in LLM agents and tool use. Builds on 26 of its 51 references that are in the map. First posted on arXiv 20 Jun 2026.

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26 of 51 references.

Closest ancestors · 1

Same direction, newest first

  1. 2024AgentClinic: a multimodal agent benchmark to evaluate AI in simulated clinical environments13 May

Other references · 25

  1. 2020Measuring Massive Multitask Language Understandingcited by 7,963
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  3. 2023GPQA: A Graduate-Level Google-Proof Q&A Benchmarkcited by 2,879
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  6. 2020MiniLM: Deep Self-Attention Distillation for Task-Agnostic Compression of Pre-Trained Transformerscited by 1,463
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  9. 2020What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Examscited by 1,356
  10. 2023Gorilla: Large Language Model Connected with Massive APIscited by 1,332
  11. 2023GAIA: a benchmark for General AI Assistantscited by 1,128
  12. 2025BrowseComp: A Simple Yet Challenging Benchmark for Browsing Agentscited by 647
13 more
  1. 2023Enabling Large Language Models to Generate Text with Citationscited by 595
  2. 2025HealthBench: Evaluating Large Language Models Towards Improved Human Healthcited by 429
  3. 2024AppWorld: A Controllable World of Apps and People for Benchmarking Interactive Coding Agentscited by 401
  4. 2023Evaluating Verifiability in Generative Search Enginescited by 303
  5. 2020Selective Question Answering under Domain Shiftcited by 238
  6. 2024LAB-Bench: Measuring Capabilities of Language Models for Biology Researchcited by 156
  7. 2023GeneGPT: Augmenting Large Language Models with Domain Tools for Improved Access to Biomedical Informationcited by 117
  8. 2019HEAD-QA: A Healthcare Dataset for Complex Reasoningcited by 101
  9. 2024K-QA: A Real-World Medical Q&A Benchmarkcited by 31
  10. 2024OLAPH: Improving Factuality in Biomedical Long-form Question Answeringcited by 20
  11. 2026Healthcare AI GYM for Medical Agentscited by 4
  12. 2025Generalist Large Language Models Outperform Clinical Tools on Medical Benchmarkscited by 2
  13. 2026ResearchMath-14K: Scaling Research-Level Mathematics via Agentscited by 2

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