Closed-Form Node Classification with Exact Graph Unlearning
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Abstract (arXiv)
Graph neural networks for node classification are typically trained by gradient descent over hundreds or thousands of epochs. Recent work has shown that, when properly tuned, classic GCN/SAGE/GAT architectures can match graph transformers on many node-classification benchmarks. We ask a complementary question: how much of this performance can be recovered by deterministic closed-form solvers, and what guarantees does this enable? We introduce a routed closed-form framework selected by adjusted homophily. For assortative graphs, we use SGC-style propagation followed by Ridge regression; for heterophilous graphs, we introduce LCF-Net, a layer-wise closed-form graph feature-refinement network whose per-layer Ridge solves are capped by a Gaussian kernel-Ridge head. Across 14 benchmarks, including ogbn-arxiv and ogbn-proteins, our closed-form predictors match or beat the best vanilla 2-layer GCN/SAGE/GAT on 9 of 9 measured datasets, tie tuned deep recipes within one standard deviation on 9 of 12 small benchmarks, and exceed the OGB-leaderboard plain GCN on both large graphs. The remaining heterophilous gap closely tracks the gain from vanilla 2-layer to deep SAGE, suggesting that the residual difference is primarily architectural. Because our predictors are explicit solutions of deterministic linear systems, modified graph inputs can be re-solved to obtain retrain-equivalent parameters. We formalize exact graph-object unlearning for label, feature, edge, node, and subgraph modifications, prove K-hop locality for Ridge components, and verify exactness across 109 configurations. On ogbn-arxiv, localized updates give 21--45× speedups over full re-solving and roughly 106× speedups over gradient retraining. Structural-inversion experiments further quantify the privacy floor of exact retraining and the additional leakage of approximate graph-unlearning methods.
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References · 28
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16 more
- 2022Revisiting Heterophily For Graph Neural Networkscited by 169
- 2019Graph Neural Tangent Kernel: Fusing Graph Neural Networks with Graph Kernelscited by 161
- 2021Graph Unlearningcited by 138
- 2023SGFormer: Simplifying and Empowering Transformers for Large-Graph Representationscited by 133
- 2024Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classificationcited by 85
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- 2022Characterizing Graph Datasets for Node Classification: Homophily-Heterophily Dichotomy and Beyondcited by 60
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- 2024Fully-inductive Node Classification on Arbitrary Graphscited by 39
- 2024Towards Effective and General Graph Unlearning via Mutual Evolutioncited by 29
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- 2025Unlearning Inversion Attacks for Graph Neural Networkscited by 4
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- 2024Mixture of Experts Meets Decoupled Message Passing: Towards General and Adaptive Node Classification
- 2024GNNAnatomy: Rethinking Model-Level Explanations for Graph Neural Networks
- 2022Certified Graph Unlearning
- 2025H3GNNs: Harmonizing Heterophily and Homophily in GNNs via Joint Structural Node Encoding and Self-Supervised Learning
- 2024Improving the interpretability of GNN predictions through conformal-based graph sparsification
- 2024Diffusing to the Top: Boost Graph Neural Networks with Minimal Hyperparameter Tuning
- 2023Train Your Own GNN Teacher: Graph-Aware Distillation on Textual Graphs
- 2021Cold Brew: Distilling Graph Node Representations with Incomplete or Missing Neighborhoods