PASC: Pipeline-Aware Conformal Prediction with Joint Coverage Guarantees for Multi-Stage NLP and LLM Pipelines

Modern NLP and LLM systems are pipelines: named entity recognition (NER) -> entity disambiguation (NED) -> entity typing, retrieval-augmented generation (retriever -> reader), and agentic chains of planner -> tool -> critic. Errors compound across stages, but existing uncertainty quantification methods either calibrate each stage independently (no joint coverage) or apply a Bonferroni union bound (joint coverage, but conservative). We present PASC (Pipeline-Aware Split Conformal), which reduces multi-stage joint coverage to a single scalar conformal prediction problem on the joint maximum nonconformity score. PASC provides a finite-sample distribution-free guarantee that all K stages are simultaneously covered with probability at least 1 - alpha, and is nearly tight up to a 1/(n+1) factor. On a three-stage NER -> NED -> entity-typing pipeline over CoNLL-2003, PASC achieves 96.4% end-to-end coverage versus 93.4% for Bonferroni and 86.5% for independent CP, at identical average prediction set size (1.083). Under distribution shift to WNUT-17 Twitter and WikiNEuRal Wikipedia data, PASC empirically maintains the target coverage in the tested shift settings while independent CP collapses to 59%. PASC requires a single quantile computation, runs 1.7x faster than Bonferroni, and scales to K = 6 stages where independent CP drops to 0.53 end-to-end coverage. The same joint-maximum-score reduction applies directly to compound LLM systems and agent pipelines.