How Researchers Navigate Accountability, Transparency, and Trust When Using AI Tools in Early-Stage Research: A Think-Aloud Study

In the early stages of scientific research, researchers rely on core scholarly judgments to identify relevant literature, assess credible evidence, and determine which directions merit pursuit. As AI tools become increasingly integrated into these early-stage workflows, the scholarly judgments that were once transparent and attributable to individual researchers become obscured, raising critical Responsible AI (RAI) concerns around accountability, transparency, and trust. Yet how these three dimensions manifest in real-time, in-situ scholarly practice remains largely unexplored. To address this gap, we conducted a think-aloud study with 15 researchers to examine how they used AI tools powered by large language models (LLMs) across early-stage research tasks, including literature exploration, synthesis, and research ideation. Our key findings address the tripartite constructs of accountability, transparency, and trust. First, the confident tone of AI outputs misrepresents epistemic uncertainty, making it more difficult for researchers (who are ultimately accountable) to identify which outputs require the greatest scrutiny. Second, opaque retrieval and content construction make provenance difficult to establish for transparency. Third, trust in AI is fragile, context-dependent, and easily eroded. In response, participant researchers were seen to develop compensatory strategies to restore scholarly judgment under uncertainty. Overall, our findings serve to contextualize AI-mediated research as a RAI problem grounded in lived researcher experience and motivate attention to deliberate AI integration that preserves accountability, supports transparency, and fosters informed trust.