mlsanityData to 14 Oct 2026

PRISM: Exploring Heterogeneous Pretrained EEG Foundation Model Transfer to Clinical Differential Diagnosis

arXiv 2603.02268 ↗First posted 28 Feb 2026cs.LG cs.AIcited by 0

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Abstract (arXiv)

EEG foundation models are typically pretrained on narrow-source clinical archives and evaluated on benchmarks from the same ecosystem, leaving unclear whether representations encode neural physiology or recording-distribution artifacts. We introduce PRISM (Population Representative Invariant Signal Model), a masked autoencoder ablated along two axes -- pretraining population and downstream adaptation -- with architecture and preprocessing fixed. We compare a narrow-source EU/US corpus (TUH + PhysioNet) against a geographically diverse pool augmented with multi-center South Asian clinical recordings across multiple EEG systems. Three findings emerge. First, narrow-source pretraining yields stronger linear probes on distribution-matched benchmarks, while diverse pretraining produces more adaptable representations under fine-tuning -- a trade-off invisible under single-protocol evaluation. Trained on three source corpora, PRISM matches or outperforms REVE (92 datasets, 60,000+ hours) on the majority of tasks, demonstrating that targeted diversity can substitute for indiscriminate scale and that dataset count is a confounding variable in model comparison. Second, on a clinically challenging and previously untested task -- distinguishing epilepsy from diagnostic mimickers via interictal EEG -- the diverse checkpoint outperforms the narrow-source checkpoint by +12.3 pp balanced accuracy, the largest gap across all evaluations. Third, systematic inconsistencies between EEG-Bench and EEG-FM-Bench reverse model rankings on identical datasets by up to 24 pp; we identify six concrete sources including split construction, checkpoint selection, segment length, and normalization, showing these factors compound non-additively.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 9 of its 29 references that are in the map. First posted on arXiv 28 Feb 2026.

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9 of 29 references.

References · 9

  1. 2021Masked Autoencoders Are Scalable Vision Learnerscited by 7,403
  2. 2018Confounding variables can degrade generalization performance of radiological deep learning modelscited by 379
  3. 2024Large Brain Model for Learning Generic Representations with Tremendous EEG Data in BCIcited by 327
  4. 2024CBraMod: A Criss-Cross Brain Foundation Model for EEG Decodingcited by 199
  5. 2020Inter-database validation of a deep learning approach for automatic sleep scoringcited by 38
  6. 2020Epileptic Seizures Detection Using Deep Learning Techniques: A Reviewcited by 32
  7. 2024Demographic Bias of Expert-Level Vision-Language Foundation Models in Medical Imagingcited by 24
  8. 2025EEG-FM-Bench: A Comprehensive Benchmark for the Systematic Evaluation and Diagnostic Analyses of EEG Foundation Modelscited by 23
  9. 2025EEG-Bench: A Benchmark for EEG Foundation Models in Clinical Applicationscited by 14

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  1. 2026Aperiodic and Low-Frequency Spectral Bias in Reconstruction based EEG Foundation Models
  2. 2024EEG-Language Pretraining for Highly Label-Efficient Clinical Phenotyping
  3. 2026Mechanistic Interpretability of EEG Foundation Models via Sparse Autoencoders
  4. 2026Multimodal Pretraining for Generalizable EEG Representation Learning
  5. 2026Pretrained, Frozen, Still Leaking: Auditing Cross-Encoder Attribute Transfer in EEG Foundation Models
  6. 2026STEAM: A Spatio-TEmporal Alignment Mixture-of-Experts Model with Hierarchical Pre-training for EEG Decoding
  7. 2026Foundation Model Guided Dual-Branch Co-Adaptation for Source-Free EEG Decoding
  8. 2026SpecMoE: Spectral Mixture-of-Experts Foundation Model for Cross-Species EEG Decoding