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When Does Multimodal Learning Help in Healthcare? A Benchmark on EHR and Chest X-Ray Fusion

arXiv 2602.23614 ↗First posted 27 Feb 2026cs.LG cs.AIcited by 0

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Abstract (arXiv)

Machine learning holds promise for advancing clinical decision support, yet it remains unclear when multimodal learning truly helps in practice, particularly under modality missingness and fairness constraints. In this work, we conduct a systematic benchmark of multimodal fusion between Electronic Health Records (EHR) and chest X-rays (CXR) on standardized cohorts from MIMIC-IV and MIMIC-CXR, aiming to answer four fundamental questions: when multimodal fusion improves clinical prediction, how different fusion strategies compare, how robust existing methods are to missing modalities, and whether multimodal models achieve algorithmic fairness. Our study reveals several key insights. Multimodal fusion improves performance when modalities are complete, with gains concentrating in diseases that require complementary information from both EHR and CXR. While cross-modal learning mechanisms capture clinically meaningful dependencies beyond simple concatenation, the rich temporal structure of EHR introduces strong modality imbalance that architectural complexity alone cannot overcome. Under realistic missingness, multimodal benefits rapidly degrade unless models are explicitly designed to handle incomplete inputs. Moreover, multimodal fusion does not inherently improve fairness, with subgroup disparities mainly arising from unequal sensitivity across demographic groups. To support reproducible and extensible evaluation, we further release a flexible benchmarking toolkit that enables plug-and-play integration of new models and datasets. Together, this work provides actionable guidance on when multimodal learning helps, when it fails, and why, laying the foundation for developing clinically deployable multimodal systems that are both effective and reliable. The open-source toolkit can be found at https://github.com/jakeykj/CareBench.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 23 of its 37 references that are in the map. First posted on arXiv 27 Feb 2026.

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23 of 37 references.

References · 23

  1. 2017Multitask learning and benchmarking with clinical time series datacited by 287
  2. 2021SMIL: Multimodal Learning with Severely Missing Modalitycited by 243
  3. 2023Multi-modal Learning with Missing Modality via Shared-Specific Feature Modellingcited by 159
  4. 2019MMTM: Multimodal Transfer Module for CNN Fusioncited by 128
  5. 2019MIMIC-Extract: A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-IIIcited by 121
  6. 2023EHRSHOT: An EHR Benchmark for Few-Shot Evaluation of Foundation Modelscited by 101
  7. 2021Time Series Prediction using Deep Learning Methods in Healthcarecited by 71
  8. 2022M3Care: Learning with Missing Modalities in Multimodal Healthcare Datacited by 71
  9. 2024Flex-MoE: Modeling Arbitrary Modality Combination via the Flexible Mixture-of-Expertscited by 69
  10. 2024DrFuse: Learning Disentangled Representation for Clinical Multi-Modal Fusion with Missing Modality and Modal Inconsistencycited by 51
  11. 2021Combining 3D Image and Tabular Data via the Dynamic Affine Feature Map Transformcited by 38
  12. 2019Benchmarking machine learning models on multi-centre eICU critical care datasetcited by 35
11 more
  1. 2022Improving Medical Predictions by Irregular Multimodal Electronic Health Records Modelingcited by 33
  2. 2021RadFusion: Benchmarking Performance and Fairness for Multimodal Pulmonary Embolism Detection from CT and EHRcited by 32
  3. 2023Yet Another ICU Benchmark: A Flexible Multi-Center Framework for Clinical MLcited by 28
  4. 2023Learning Missing Modal Electronic Health Records with Unified Multi-modal Data Embedding and Modality-Aware Attentioncited by 25
  5. 2023HEALNet: Multimodal Fusion for Heterogeneous Biomedical Datacited by 25
  6. 2023Multimodal Clinical Benchmark for Emergency Care (MC-BEC): A Comprehensive Benchmark for Evaluating Foundation Models in Emergency Medicinecited by 24
  7. 2025Adaptive Unimodal Regulation for Balanced Multimodal Information Acquisitioncited by 18
  8. 2019Benchmarking Deep Learning Architectures for Predicting Readmission to the ICU and Describing Patients-at-Riskcited by 17
  9. 2023Clairvoyance: A Pipeline Toolkit for Medical Time Seriescited by 12
  10. 2025Rethinking Multimodal Learning from the Perspective of Mitigating Classification Ability Disproportioncited by 12
  11. 2025Multimodal Disease Progression Modeling via Spatiotemporal Disentanglement and Multiscale Alignmentcited by 1

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