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Rethinking Divisive Hierarchical Clustering from a Distributional Perspective

arXiv 2601.19718 ↗First posted 27 Jan 2026cs.LGcited by 0

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Abstract (arXiv)

We uncover that current objective-based Divisive Hierarchical Clustering (DHC) methods produce a dendrogram that does not have three desired properties i.e., no unwarranted splitting, group similar clusters into a same subset, ground-truth correspondence. This shortcoming has their root cause in using a set-oriented bisecting assessment criterion. We show that this shortcoming can be addressed by using a distributional kernel, instead of the set-oriented criterion; and the resultant clusters achieve a new distribution-oriented objective to maximize the total similarity of all clusters (TSC). Our theoretical analysis shows that the resultant dendrogram guarantees a lower bound of TSC. The empirical evaluation shows the effectiveness of our proposed method on artificial and Spatial Transcriptomics (bioinformatics) datasets. Our proposed method successfully creates a dendrogram that is consistent with the biological regions in a Spatial Transcriptomics dataset, whereas other contenders fail.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 11 of its 46 references that are in the map. First posted on arXiv 27 Jan 2026.

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11 of 46 references.

References · 11

  1. 2019Wasserstein Weisfeiler-Lehman Graph Kernelscited by 104
  2. 2015A cost function for similarity-based hierarchical clusteringcited by 63
  3. 2016Hierarchical Clustering via Spreading Metricscited by 17
  4. 2020Scalable Hierarchical Agglomerative Clusteringcited by 13
  5. 2020Objective-Based Hierarchical Clustering of Deep Embedding Vectorscited by 9
  6. 2018Foundations of Comparison-Based Hierarchical Clusteringcited by 7
  7. 2023Nearly-Optimal Hierarchical Clustering for Well-Clustered Graphscited by 7
  8. 2020Point-Set Kernel Clusteringcited by 6
  9. 2020An Objective for Hierarchical Clustering in Euclidean Space and its Connection to Bisecting K-meanscited by 6
  10. 2014A novel brain partition highlights the modular skeleton shared by structure and functioncited by 3
  11. 2018Hierarchical clustering that takes advantage of both density-peak and density-connectivitycited by 3

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